Project name: obj1 [mutate: QA112C, GD113C, LD115C, TH117C]

Status: done

Started: 2025-02-11 06:48:04
Settings
Chain sequence(s) C: EVQLVESGGGLVQPGGSLRLSCAASDFTFRSYEMSWVRQAPGKGLEWVSAISGSGGSTYYADSVKGRFTISRDNSKNTLYLQMNSLRAEDTAIYYCARLRDGFNKGFDYWGQGTLVTVSS
input PDB
Selected Chain(s) C
Distance of aggregation 10 Å
FoldX usage Yes
Dynamic mode No
Automated mutations No
Mutated residues TH117C,LD115C,GD113C,QA112C
Energy difference between WT (input) and mutated protein (by FoldX) 10.7776 kcal/mol

CAUTION: Your mutation/s can destabilize the protein structure

Downloads Download all the data
Simulation log
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:00)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:00)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with C chain(s) selected             (00:00:00)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:00)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:00:00)
[INFO]       FoldX:    Building mutant model                                                       (00:00:25)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:00:46)
[INFO]       Analysis: Starting Aggrescan3D on folded.pdb                                          (00:01:10)
[INFO]       Main:     Simulation completed successfully.                                          (00:01:11)
Show buried residues

Minimal score value
-3.3328
Maximal score value
1.5458
Average score
-0.7521
Total score value
-90.2502

The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan3D score mutation
residue index residue name chain Aggrescan3D score
mutation
1 E C -2.0063
2 V C -0.9194
3 Q C -1.0905
4 L C 0.0000
5 V C 0.7299
6 E C -0.0321
7 S C -0.7076
8 G C -1.1612
9 G C -0.8929
10 G C 0.1535
11 L C 0.9404
12 V C -0.1248
13 Q C -1.4024
14 P C -1.5347
15 G C -1.4133
16 G C -0.9781
17 S C -1.2307
18 L C -0.9467
19 R C -2.1405
20 L C 0.0000
21 S C -0.5382
22 C C 0.0000
23 A C -0.2021
24 A C 0.0000
25 S C -0.2018
26 D C 0.0000
27 F C 1.5458
28 T C 0.2525
29 F C 0.0000
30 R C -2.0325
31 S C -0.8863
32 Y C -1.2160
33 E C -1.1451
34 M C 0.0000
35 S C 0.0000
36 W C 0.0000
37 V C 0.0000
38 R C 0.0000
39 Q C -0.7554
40 A C -1.3257
41 P C -1.2971
42 G C -1.4381
43 K C -2.1468
44 G C -1.0951
45 L C 0.3006
46 E C -0.4286
47 W C 0.3224
48 V C 0.0000
49 S C 0.0000
50 A C 0.0000
51 I C 0.0000
52 S C -0.5831
53 G C -1.2447
54 S C -1.2286
55 G C -1.0817
56 G C -0.7345
57 S C -0.3025
58 T C 0.1989
59 Y C 0.6077
60 Y C -0.3559
61 A C -1.1386
62 D C -2.3443
63 S C -1.7150
64 V C 0.0000
65 K C -2.3847
66 G C -1.6175
67 R C 0.0000
68 F C 0.0000
69 T C -0.6722
70 I C 0.0000
71 S C -0.5624
72 R C -1.3626
73 D C -1.9805
74 N C -2.1901
75 S C -1.7905
76 K C -2.3163
77 N C -1.6492
78 T C 0.0000
79 L C 0.0000
80 Y C -0.6697
81 L C 0.0000
82 Q C -1.2337
83 M C 0.0000
84 N C -1.3327
85 S C -1.2322
86 L C 0.0000
87 R C -2.5217
88 A C -1.9713
89 E C -2.3972
90 D C 0.0000
91 T C -1.0476
92 A C 0.0000
93 I C -0.3055
94 Y C 0.0000
95 Y C 0.1936
96 C C 0.0000
97 A C 0.0000
98 R C 0.0000
99 L C 0.0000
100 R C -3.1896
101 D C -3.3328
102 G C -2.0863
103 F C -1.2307
104 N C -2.4282
105 K C -3.1842
106 G C -1.9062
107 F C -0.9872
108 D C -1.1028
109 Y C -0.2204
110 W C 0.6919
111 G C 0.2578
112 A C -0.0440 mutated: QA112C
113 D C -0.7540 mutated: GD113C
114 T C -0.8466
115 D C -1.1790 mutated: LD115C
116 V C 0.0000
117 H C -0.6950 mutated: TH117C
118 V C 0.0000
119 S C -0.8896
120 S C -1.1121
Download PDB file
View in 3Dmol
Play the video

Laboratory of Theory of Biopolymers 2018