Project name: query_structure

Status: done

Started: 2026-03-17 01:16:41
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Chain sequence(s) A: VSDVPRDLEVVAATPTSLLISWDPPRCRRIRYYRITYGETGGNSPVQEFTVPGSKSTATISGLKPGVDYTITVYAVTGMPGLKIPRKPISINYRT
input PDB
Selected Chain(s) A
Distance of aggregation 10 Å
FoldX usage Yes
Dynamic mode No
Automated mutations No
Downloads Download all the data
Simulation log
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:00)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:00)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with A chain(s) selected             (00:00:00)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:00)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:00:00)
[INFO]       Analysis: Starting Aggrescan3D on folded.pdb                                          (00:00:45)
[INFO]       Main:     Simulation completed successfully.                                          (00:00:45)
Show buried residues

Minimal score value
-3.439
Maximal score value
1.5095
Average score
-0.8008
Total score value
-76.0752

The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan3D score mutation
residue index residue name chain Aggrescan3D score
mutation
1 V A 1.3560
2 S A -0.1418
3 D A -1.0151
4 V A -0.8382
5 P A 0.0000
6 R A -2.4233
7 D A -2.8228
8 L A 0.0000
9 E A -1.9376
10 V A 0.0749
11 V A 1.5095
12 A A 0.8669
13 A A 0.2762
14 T A -0.6028
15 P A -1.1563
16 T A -1.0130
17 S A -0.5562
18 L A 0.0000
19 L A 0.6885
20 I A 0.0000
21 S A -0.8920
22 W A 0.0000
23 D A -2.4045
24 P A -1.9291
25 P A 0.0000
26 R A -2.5073
27 C A -2.0625
28 R A -3.4390
29 R A -3.2773
30 I A -2.1939
31 R A -2.2811
32 Y A -1.0811
33 Y A 0.0000
34 R A -0.8219
35 I A 0.0000
36 T A -0.5125
37 Y A -0.1535
38 G A 0.0000
39 E A -1.4233
40 T A -1.1697
41 G A -1.1626
42 G A -1.3001
43 N A -1.5097
44 S A -0.8033
45 P A -0.2523
46 V A 0.5573
47 Q A -0.6411
48 E A -1.4966
49 F A -0.7161
50 T A -0.3616
51 V A 0.0000
52 P A -1.1236
53 G A -1.7837
54 S A -1.5570
55 K A -1.9592
56 S A -1.2710
57 T A -0.6697
58 A A 0.0000
59 T A 0.2190
60 I A 0.0000
61 S A -0.6690
62 G A -1.0388
63 L A 0.0000
64 K A -2.3515
65 P A -1.6467
66 G A -1.4145
67 V A -1.4220
68 D A -1.9816
69 Y A 0.0000
70 T A -0.6331
71 I A 0.0000
72 T A -0.2782
73 V A 0.0000
74 Y A -0.0935
75 A A -0.4467
76 V A -0.4026
77 T A -1.1453
78 G A -1.0596
79 M A -0.5416
80 P A -0.4875
81 G A -0.2867
82 L A 0.4405
83 K A -0.5532
84 I A 0.9479
85 P A -0.0119
86 R A -0.5094
87 K A -1.4585
88 P A -0.8338
89 I A -0.3353
90 S A -0.3861
91 I A -0.6011
92 N A -1.6520
93 Y A -1.3961
94 R A -2.4872
95 T A -1.6250
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Laboratory of Theory of Biopolymers 2018