Project name: REST_test

Status: done

Started: 2025-05-07 13:09:59
Settings
Chain sequence(s) A: MDSLVVLVLCLSCLLLLSLWRQSSGRGKLPPGPTPLPVIGNILQIGIKDISKSLTNLSKVYGPVFTLYFGLKPIVVLHGYEAVKEALIDLGEEFSGRGIFPLAERANRGFGIVFSNGKKWKEIRRFSLMTLRNFGMGKRSIEDRVQEEARCLVEELRKTKASPCDPTFILGCAPCNVICSIIFHKRFDYKDQQFLNLMEKLNENIKILSSPWIQICNNFSPIIDYFPGTHNKLLKNVAFMKSYILEKVKEHQESMDMNNPQDFIDCFLMKMEKEKHNQPSEFTIESLENTAVDLFGAGTETTSTTLRYALLLLLKHPEVTAKVQEEIERVIGRNRSPCMQDRSHMPYTDAVVHEVQRYIDLLPTSLPHAVTCDIKFRNYLIPKGTTILISLTSVLHDNKEFPNPEMFDPHHFLDEGGNFKKSKYFMPFSAGKRICVGEALAGMELFLFLTSILQNFNLKSLVDPKNLDTTPVVNGFASVPPFYQLCFIPV
input PDB
Selected Chain(s) A
Distance of aggregation 5 Å
FoldX usage Yes
Dynamic mode No
Automated mutations No
Mutated residues RS342A
Energy difference between WT (input) and mutated protein (by FoldX) 1.155 kcal/mol

CAUTION: Your mutation/s can destabilize the protein structure

Downloads Download all the data
Simulation log
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:00)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:00)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with A chain(s) selected             (00:00:00)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:00)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:00:00)
[INFO]       FoldX:    Building mutant model                                                       (00:11:57)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:12:11)
[INFO]       Analysis: Starting Aggrescan3D on folded.pdb                                          (00:17:06)
[INFO]       Main:     Simulation completed successfully.                                          (00:17:11)
Show buried residues

Minimal score value
-2.1567
Maximal score value
2.0334
Average score
-0.248
Total score value
-121.5411

The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan3D score mutation
residue index residue name chain Aggrescan3D score
mutation
1 M A 0.7251
2 D A -1.6343
3 S A -0.2545
4 L A 1.6791
5 V A 1.4846
6 V A 1.7959
7 L A 1.6902
8 V A 2.0334
9 L A 1.6688
10 C A 1.0062
11 L A 1.5059
12 S A 0.3362
13 C A 0.7995
14 L A 1.7877
15 L A 1.1652
16 L A 0.8777
17 L A 0.7433
18 S A 0.1865
19 L A 0.9124
20 W A 1.0294
21 R A -1.6602
22 Q A -0.4597
23 S A -0.2783
24 S A -0.3228
25 G A -0.5445
26 R A -0.7392
27 G A -0.8631
28 K A -1.6927
29 L A -0.1356
30 P A 0.0000
31 P A -0.1309
32 G A 0.0000
33 P A 0.0000
34 T A -0.0709
35 P A 0.0000
36 L A 0.5312
37 P A 0.3145
38 V A 1.8601
39 I A 0.8986
40 G A 0.0000
41 N A 0.0000
42 I A 0.5967
43 L A 1.5014
44 Q A -0.3007
45 I A 0.0000
46 G A -0.2134
47 I A 0.0593
48 K A -1.7241
49 D A -0.8481
50 I A 0.0000
51 S A -0.3448
52 K A -1.7113
53 S A -0.3332
54 L A 0.0000
55 T A -0.2024
56 N A -0.8448
57 L A 0.0005
58 S A -0.3146
59 K A -1.3877
60 V A 1.5289
61 Y A 0.6270
62 G A -0.0978
63 P A -0.1774
64 V A 0.0000
65 F A 0.0000
66 T A 0.0000
67 L A 0.0000
68 Y A 0.1210
69 F A 0.0000
70 G A 0.3187
71 L A 1.4720
72 K A -0.1131
73 P A -0.1205
74 I A 0.0000
75 V A 0.0000
76 V A 0.0000
77 L A 0.0000
78 H A -0.1501
79 G A -0.0962
80 Y A 0.0000
81 E A -1.8199
82 A A 0.0000
83 V A 0.0000
84 K A -0.7069
85 E A -1.0259
86 A A 0.0000
87 L A 0.0000
88 I A 0.7724
89 D A -1.6034
90 L A 0.0098
91 G A -0.1902
92 E A -1.9275
93 E A -0.8703
94 F A 0.0000
95 S A 0.0000
96 G A 0.0000
97 R A -0.1778
98 G A 0.0000
99 I A 1.2257
100 F A 0.4177
101 P A 0.0000
102 L A 0.0000
103 A A -0.2674
104 E A -1.7614
105 R A -0.6338
106 A A -0.0584
107 N A 0.0000
108 R A -2.0266
109 G A -0.4375
110 F A 0.2664
111 G A 0.0000
112 I A 0.0000
113 V A 0.3870
114 F A 0.3527
115 S A 0.0000
116 N A -1.0356
117 G A -0.9194
118 K A -1.8318
119 K A -0.5982
120 W A 0.0000
121 K A -1.6774
122 E A -0.9108
123 I A 0.0000
124 R A 0.0000
125 R A -1.8441
126 F A 0.0000
127 S A 0.0000
128 L A 0.9421
129 M A 0.4687
130 T A 0.0000
131 L A -0.1720
132 R A -1.9264
133 N A -0.9467
134 F A 0.0000
135 G A -0.0413
136 M A 0.9326
137 G A -0.5808
138 K A -2.1099
139 R A -2.1567
140 S A -0.3894
141 I A 0.1867
142 E A -0.4102
143 D A -1.0030
144 R A -0.3448
145 V A 0.0000
146 Q A -0.5095
147 E A -1.8526
148 E A 0.0000
149 A A 0.0000
150 R A -1.7929
151 C A -0.0559
152 L A 0.0000
153 V A 0.0000
154 E A -1.9943
155 E A -0.7978
156 L A 0.0000
157 R A -1.8953
158 K A -1.9525
159 T A -0.6124
160 K A -1.6976
161 A A -0.2190
162 S A -0.1784
163 P A -0.2616
164 C A -0.1366
165 D A -1.0944
166 P A 0.0000
167 T A 0.0908
168 F A 0.5837
169 I A 0.3246
170 L A 0.0000
171 G A 0.0000
172 C A 0.0000
173 A A 0.0000
174 P A 0.0000
175 C A 0.0000
176 N A 0.0000
177 V A 0.0000
178 I A 0.0000
179 C A 0.0000
180 S A 0.0000
181 I A 0.0000
182 I A 0.0000
183 F A 0.0000
184 H A -1.1897
185 K A -1.3606
186 R A -0.5769
187 F A 0.0000
188 D A -1.7894
189 Y A 0.0000
190 K A -1.8168
191 D A -1.1729
192 Q A -1.3960
193 Q A -0.6572
194 F A 0.0000
195 L A 0.1904
196 N A -0.4583
197 L A 0.0000
198 M A 0.0000
199 E A -1.8656
200 K A -0.6195
201 L A 0.0000
202 N A 0.0000
203 E A -0.4088
204 N A 0.0000
205 I A -0.0560
206 K A -1.4177
207 I A 0.0000
208 L A 0.2716
209 S A 0.0000
210 S A -0.0468
211 P A -0.0014
212 W A 0.3368
213 I A 0.0000
214 Q A -0.1812
215 I A 0.3887
216 C A 0.0000
217 N A -0.1731
218 N A -0.1158
219 F A 0.2373
220 S A -0.0757
221 P A -0.2179
222 I A 0.2412
223 I A 0.0000
224 D A -1.5513
225 Y A 1.3080
226 F A 1.9487
227 P A 0.0236
228 G A -0.2775
229 T A -0.0827
230 H A 0.0000
231 N A -0.9109
232 K A -1.4925
233 L A 0.0000
234 L A 0.0031
235 K A -1.6454
236 N A 0.0000
237 V A 0.1833
238 A A 0.1898
239 F A 0.7088
240 M A 0.0000
241 K A -0.2256
242 S A -0.1694
243 Y A 0.0000
244 I A 0.0000
245 L A -0.0384
246 E A -1.8119
247 K A -0.5723
248 V A 0.0000
249 K A -1.7513
250 E A -2.0845
251 H A -0.5621
252 Q A -1.1440
253 E A -1.9757
254 S A -0.4932
255 M A -0.0077
256 D A -1.0187
257 M A -0.0780
258 N A -1.3346
259 N A -0.9378
260 P A -0.3253
261 Q A -0.6222
262 D A 0.0000
263 F A 0.0000
264 I A 0.0000
265 D A 0.0000
266 C A 0.1104
267 F A 0.0000
268 L A 0.0000
269 M A 0.0427
270 K A -0.3967
271 M A -0.1263
272 E A -1.4922
273 K A -1.9584
274 E A -0.8287
275 K A -1.9175
276 H A -1.5050
277 N A -1.5685
278 Q A -1.4809
279 P A -0.5978
280 S A -0.1579
281 E A -0.3407
282 F A 0.0000
283 T A 0.0758
284 I A 0.2527
285 E A -1.4291
286 S A 0.0000
287 L A 0.0000
288 E A -0.2526
289 N A 0.0000
290 T A 0.0000
291 A A 0.0000
292 V A 0.0000
293 D A -0.1914
294 L A 0.0000
295 F A 0.0000
296 G A -0.0656
297 A A 0.0067
298 G A -0.0773
299 T A 0.0000
300 E A 0.0000
301 T A -0.0347
302 T A 0.0000
303 S A 0.0000
304 T A 0.0000
305 T A 0.0000
306 L A 0.0000
307 R A -0.1796
308 Y A 0.0000
309 A A 0.0000
310 L A 0.0000
311 L A 0.0000
312 L A 0.0000
313 L A 0.0000
314 L A 0.0000
315 K A -0.4473
316 H A -0.2822
317 P A -0.4815
318 E A -1.5183
319 V A 0.0000
320 T A 0.0000
321 A A -0.1338
322 K A -0.9279
323 V A 0.0000
324 Q A -0.4958
325 E A -1.8505
326 E A 0.0000
327 I A 0.0000
328 E A -1.7517
329 R A -2.0387
330 V A 0.0011
331 I A 0.0000
332 G A -0.4859
333 R A -1.4066
334 N A -1.6311
335 R A -1.0654
336 S A -0.1929
337 P A 0.0000
338 C A 0.1687
339 M A 0.0538
340 Q A -1.1532
341 D A 0.0000
342 S A -0.0748 mutated: RS342A
343 S A -0.3967
344 H A -1.0282
345 M A 0.0000
346 P A 0.0307
347 Y A 0.1417
348 T A 0.0000
349 D A -0.2631
350 A A 0.0000
351 V A 0.0000
352 V A 0.0000
353 H A 0.0000
354 E A 0.0000
355 V A 0.0000
356 Q A 0.0000
357 R A 0.0000
358 Y A 0.2214
359 I A 0.0000
360 D A 0.0000
361 L A 0.2337
362 L A 0.2486
363 P A 0.0000
364 T A 0.0000
365 S A 0.0000
366 L A 0.2337
367 P A 0.0162
368 H A 0.0000
369 A A 0.0000
370 V A 0.0000
371 T A 0.0243
372 C A -0.2588
373 D A -1.9636
374 I A 0.0000
375 K A -1.6617
376 F A 0.0000
377 R A -2.0717
378 N A -1.5575
379 Y A 0.0802
380 L A 0.1449
381 I A 0.0000
382 P A -0.6466
383 K A -1.9875
384 G A -0.7759
385 T A 0.0000
386 T A 0.0000
387 I A 0.0000
388 L A 0.1936
389 I A 0.0000
390 S A 0.0000
391 L A 0.0000
392 T A -0.0124
393 S A -0.0222
394 V A 0.0000
395 L A 0.0000
396 H A -0.3397
397 D A -0.6315
398 N A -1.6661
399 K A -2.0354
400 E A -0.9091
401 F A 0.0000
402 P A -0.5787
403 N A -1.0900
404 P A 0.0000
405 E A -1.6605
406 M A 0.5537
407 F A 0.0000
408 D A -0.6969
409 P A 0.0000
410 H A -0.9883
411 H A -0.2947
412 F A 0.0000
413 L A 0.0648
414 D A -0.7203
415 E A -1.9803
416 G A -0.8381
417 G A -0.5748
418 N A -1.2300
419 F A -0.0373
420 K A -1.9210
421 K A -2.0131
422 S A -0.6383
423 K A -1.7041
424 Y A 0.0000
425 F A 0.2154
426 M A 0.0000
427 P A 0.0113
428 F A 0.2980
429 S A 0.0322
430 A A 0.0000
431 G A -0.2000
432 K A -1.0123
433 R A 0.0000
434 I A 0.8641
435 C A 0.4831
436 V A 0.3317
437 G A -0.2198
438 E A -1.0958
439 A A -0.1075
440 L A 0.1860
441 A A 0.0099
442 G A -0.1261
443 M A 0.1248
444 E A 0.0000
445 L A 0.0000
446 F A 0.0000
447 L A 0.0000
448 F A 0.0000
449 L A 0.0000
450 T A 0.0000
451 S A 0.0000
452 I A 0.0000
453 L A 0.0000
454 Q A 0.0000
455 N A -0.2492
456 F A 0.0000
457 N A -0.6892
458 L A -0.2088
459 K A -1.4925
460 S A -0.1078
461 L A 1.2653
462 V A 1.0009
463 D A -1.1419
464 P A -0.6491
465 K A -1.9401
466 N A -1.5795
467 L A 0.0000
468 D A -1.7907
469 T A -0.3409
470 T A -0.0830
471 P A 0.2433
472 V A 1.8393
473 V A 0.6889
474 N A -0.2561
475 G A -0.0409
476 F A 0.3395
477 A A 0.0000
478 S A 0.0000
479 V A 0.0000
480 P A 0.0000
481 P A 0.3331
482 F A 1.9356
483 Y A 0.0000
484 Q A -0.7025
485 L A 0.0000
486 C A 0.0000
487 F A 0.0000
488 I A 0.7864
489 P A 0.2819
490 V A 1.7394
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Laboratory of Theory of Biopolymers 2018