| Chain sequence(s) |
H: QVQLVESGGGLVQPGGSLRLSCAASGSISSHNDMSWYRQAPGQRLELVSFIASGGSTYYADSVKGRFTISRDNSKNTLYLQMNSLRAEDTAVYYCNSRTYDGEKTYWGQGTTVTVSS
input PDB |
| Selected Chain(s) | H |
| Distance of aggregation | 10 Å |
| FoldX usage | Yes |
| Dynamic mode | No |
| Automated mutations | No |
| Downloads | Download all the data |
| Simulation log |
[INFO] Logger: Verbosity set to: 2 - [INFO] (00:00:00)
[WARNING] runJob: Working directory already exists (possibly overwriting previous results -ow
to prevent this behavior) (00:00:00)
[INFO] runJob: Starting aggrescan3d job on: input.pdb with H chain(s) selected (00:00:01)
[INFO] runJob: Creating pdb object from: input.pdb (00:00:01)
[INFO] FoldX: Starting FoldX energy minimalization (00:00:01)
[INFO] Analysis: Starting Aggrescan3D on folded.pdb (00:00:42)
[INFO] Main: Simulation completed successfully. (00:00:43)
|
The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.
| residue index | residue name | chain | Aggrescan3D score | mutation |
|---|---|---|---|---|
| residue index | residue name | chain | Aggrescan3D score | |
| 1 | Q | H | -1.5988 | |
| 2 | V | H | -1.1467 | |
| 3 | Q | H | -1.0568 | |
| 4 | L | H | 0.0000 | |
| 5 | V | H | 1.2217 | |
| 6 | E | H | 0.0000 | |
| 7 | S | H | -0.3121 | |
| 8 | G | H | -0.9783 | |
| 9 | G | H | -0.3414 | |
| 11 | G | H | 0.3076 | |
| 12 | L | H | 1.1939 | |
| 13 | V | H | 0.0043 | |
| 14 | Q | H | -1.3356 | |
| 15 | P | H | -1.5635 | |
| 16 | G | H | -1.3874 | |
| 17 | G | H | -0.9461 | |
| 18 | S | H | -0.9373 | |
| 19 | L | H | -0.6927 | |
| 20 | R | H | -1.7081 | |
| 21 | L | H | 0.0000 | |
| 22 | S | H | -0.2556 | |
| 23 | C | H | 0.0000 | |
| 24 | A | H | 0.0261 | |
| 25 | A | H | -0.3321 | |
| 26 | S | H | -0.6035 | |
| 27 | G | H | -0.7967 | |
| 28 | S | H | -0.8710 | |
| 29 | I | H | 0.0000 | |
| 30 | S | H | -1.3966 | |
| 35 | S | H | -1.1969 | |
| 36 | H | H | -1.5032 | |
| 37 | N | H | -1.1228 | |
| 38 | D | H | -1.0015 | |
| 39 | M | H | 0.0000 | |
| 40 | S | H | 0.0000 | |
| 41 | W | H | 0.0000 | |
| 42 | Y | H | 0.2499 | |
| 43 | R | H | 0.0000 | |
| 44 | Q | H | -1.4257 | |
| 45 | A | H | -1.6061 | |
| 46 | P | H | -1.2720 | |
| 47 | G | H | -1.6913 | |
| 48 | Q | H | -2.5532 | |
| 49 | R | H | -2.6168 | |
| 50 | L | H | -0.7610 | |
| 51 | E | H | -0.8927 | |
| 52 | L | H | 0.2474 | |
| 53 | V | H | 0.0000 | |
| 54 | S | H | 0.0000 | |
| 55 | F | H | 0.6721 | |
| 56 | I | H | 0.0000 | |
| 57 | A | H | -0.6872 | |
| 58 | S | H | -1.2449 | |
| 59 | G | H | -1.0315 | |
| 63 | G | H | -0.6310 | |
| 64 | S | H | -0.2195 | |
| 65 | T | H | 0.4421 | |
| 66 | Y | H | 1.1117 | |
| 67 | Y | H | 0.0074 | |
| 68 | A | H | -0.7963 | |
| 69 | D | H | -2.1480 | |
| 70 | S | H | -1.6307 | |
| 71 | V | H | 0.0000 | |
| 72 | K | H | -2.1745 | |
| 74 | G | H | -1.6052 | |
| 75 | R | H | -1.3762 | |
| 76 | F | H | 0.0000 | |
| 77 | T | H | -0.5745 | |
| 78 | I | H | 0.0000 | |
| 79 | S | H | -0.5069 | |
| 80 | R | H | -1.2253 | |
| 81 | D | H | -1.8128 | |
| 82 | N | H | -2.3270 | |
| 83 | S | H | -1.8394 | |
| 84 | K | H | -2.4699 | |
| 85 | N | H | -1.8840 | |
| 86 | T | H | -1.0334 | |
| 87 | L | H | 0.0000 | |
| 88 | Y | H | -0.4805 | |
| 89 | L | H | 0.0000 | |
| 90 | Q | H | -1.0644 | |
| 91 | M | H | 0.0000 | |
| 92 | N | H | -1.2715 | |
| 93 | S | H | -1.2062 | |
| 94 | L | H | 0.0000 | |
| 95 | R | H | -2.0788 | |
| 96 | A | H | -1.6020 | |
| 97 | E | H | -2.1699 | |
| 98 | D | H | 0.0000 | |
| 99 | T | H | -0.6360 | |
| 100 | A | H | 0.0000 | |
| 101 | V | H | 0.2574 | |
| 102 | Y | H | 0.0000 | |
| 103 | Y | H | 0.5906 | |
| 104 | C | H | 0.0000 | |
| 105 | N | H | 0.0000 | |
| 106 | S | H | 0.0000 | |
| 107 | R | H | -1.4785 | |
| 108 | T | H | -1.5895 | |
| 109 | Y | H | -1.6386 | |
| 110 | D | H | -2.4189 | |
| 113 | G | H | -2.2906 | |
| 114 | E | H | -2.9593 | |
| 115 | K | H | -2.7117 | |
| 116 | T | H | -1.2217 | |
| 117 | Y | H | -0.6297 | |
| 118 | W | H | 0.2334 | |
| 119 | G | H | 0.0491 | |
| 120 | Q | H | -0.7324 | |
| 121 | G | H | -0.0997 | |
| 122 | T | H | -0.0696 | |
| 123 | T | H | 0.0262 | |
| 124 | V | H | 0.0000 | |
| 125 | T | H | 0.0435 | |
| 126 | V | H | 0.0000 | |
| 127 | S | H | -0.7402 | |
| 128 | S | H | -0.5710 |