Project name: 22-3.pdb

Status: done

Started: 2026-03-19 06:13:22
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Chain sequence(s) H: QVQLVESGGGLVQPGGSLRLSCAASGSISSHNDMSWYRQAPGQRLELVSFIASGGSTYYADSVKGRFTISRDNSKNTLYLQMNSLRAEDTAVYYCNSRTYDGEKTYWGQGTTVTVSS
input PDB
Selected Chain(s) H
Distance of aggregation 10 Å
FoldX usage Yes
Dynamic mode No
Automated mutations No
Downloads Download all the data
Simulation log
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:00)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:00)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with H chain(s) selected             (00:00:01)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:01)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:00:01)
[INFO]       Analysis: Starting Aggrescan3D on folded.pdb                                          (00:00:42)
[INFO]       Main:     Simulation completed successfully.                                          (00:00:43)
Show buried residues

Minimal score value
-2.9593
Maximal score value
1.2217
Average score
-0.7359
Total score value
-86.098

The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan3D score mutation
residue index residue name chain Aggrescan3D score
mutation
1 Q H -1.5988
2 V H -1.1467
3 Q H -1.0568
4 L H 0.0000
5 V H 1.2217
6 E H 0.0000
7 S H -0.3121
8 G H -0.9783
9 G H -0.3414
11 G H 0.3076
12 L H 1.1939
13 V H 0.0043
14 Q H -1.3356
15 P H -1.5635
16 G H -1.3874
17 G H -0.9461
18 S H -0.9373
19 L H -0.6927
20 R H -1.7081
21 L H 0.0000
22 S H -0.2556
23 C H 0.0000
24 A H 0.0261
25 A H -0.3321
26 S H -0.6035
27 G H -0.7967
28 S H -0.8710
29 I H 0.0000
30 S H -1.3966
35 S H -1.1969
36 H H -1.5032
37 N H -1.1228
38 D H -1.0015
39 M H 0.0000
40 S H 0.0000
41 W H 0.0000
42 Y H 0.2499
43 R H 0.0000
44 Q H -1.4257
45 A H -1.6061
46 P H -1.2720
47 G H -1.6913
48 Q H -2.5532
49 R H -2.6168
50 L H -0.7610
51 E H -0.8927
52 L H 0.2474
53 V H 0.0000
54 S H 0.0000
55 F H 0.6721
56 I H 0.0000
57 A H -0.6872
58 S H -1.2449
59 G H -1.0315
63 G H -0.6310
64 S H -0.2195
65 T H 0.4421
66 Y H 1.1117
67 Y H 0.0074
68 A H -0.7963
69 D H -2.1480
70 S H -1.6307
71 V H 0.0000
72 K H -2.1745
74 G H -1.6052
75 R H -1.3762
76 F H 0.0000
77 T H -0.5745
78 I H 0.0000
79 S H -0.5069
80 R H -1.2253
81 D H -1.8128
82 N H -2.3270
83 S H -1.8394
84 K H -2.4699
85 N H -1.8840
86 T H -1.0334
87 L H 0.0000
88 Y H -0.4805
89 L H 0.0000
90 Q H -1.0644
91 M H 0.0000
92 N H -1.2715
93 S H -1.2062
94 L H 0.0000
95 R H -2.0788
96 A H -1.6020
97 E H -2.1699
98 D H 0.0000
99 T H -0.6360
100 A H 0.0000
101 V H 0.2574
102 Y H 0.0000
103 Y H 0.5906
104 C H 0.0000
105 N H 0.0000
106 S H 0.0000
107 R H -1.4785
108 T H -1.5895
109 Y H -1.6386
110 D H -2.4189
113 G H -2.2906
114 E H -2.9593
115 K H -2.7117
116 T H -1.2217
117 Y H -0.6297
118 W H 0.2334
119 G H 0.0491
120 Q H -0.7324
121 G H -0.0997
122 T H -0.0696
123 T H 0.0262
124 V H 0.0000
125 T H 0.0435
126 V H 0.0000
127 S H -0.7402
128 S H -0.5710
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Laboratory of Theory of Biopolymers 2018