Project name: obj1 [mutate: SC120C, VP2C, VS5C, SD7C]

Status: done

Started: 2025-02-10 14:26:58
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Chain sequence(s) C: EVQLVESGGGLVQPGGSLRLSCAASDFTFRSYEMSWVRQAPGKGLEWVSAISGSGGSTYYADSVKGRFTISRDNSKNTLYLQMNSLRAEDTAIYYCARLRDGFNKGFDYWGQGTLVTVSS
input PDB
Selected Chain(s) C
Distance of aggregation 10 Å
FoldX usage Yes
Dynamic mode No
Automated mutations No
Mutated residues VP2C,SC120C,SD7C,VS5C
Energy difference between WT (input) and mutated protein (by FoldX) 7.41225 kcal/mol

CAUTION: Your mutation/s can destabilize the protein structure

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Simulation log
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:00)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:00)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with C chain(s) selected             (00:00:00)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:00)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:00:00)
[INFO]       FoldX:    Building mutant model                                                       (00:00:24)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:00:37)
[INFO]       Analysis: Starting Aggrescan3D on folded.pdb                                          (00:01:00)
[INFO]       Main:     Simulation completed successfully.                                          (00:01:00)
Show buried residues

Minimal score value
-3.3342
Maximal score value
1.5825
Average score
-0.735
Total score value
-88.2023

The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan3D score mutation
residue index residue name chain Aggrescan3D score
mutation
1 E C -2.1315
2 P C -1.1791 mutated: VP2C
3 Q C -1.7003
4 L C 0.0000
5 S C -1.2470 mutated: VS5C
6 E C -1.2540
7 D C -2.3243 mutated: SD7C
8 G C -1.5109
9 G C -0.3400
10 G C 0.7697
11 L C 1.4409
12 V C 0.0596
13 Q C -1.1502
14 P C -1.2608
15 G C -1.4121
16 G C -0.9774
17 S C -1.2305
18 L C -0.9456
19 R C -2.3439
20 L C 0.0000
21 S C -1.3445
22 C C 0.0000
23 A C -0.9767
24 A C 0.0000
25 S C -0.4670
26 D C 0.0000
27 F C 1.5019
28 T C 0.2096
29 F C 0.0000
30 R C -2.0376
31 S C -0.8917
32 Y C -1.2202
33 E C -1.1477
34 M C 0.0000
35 S C 0.0000
36 W C 0.0000
37 V C 0.0000
38 R C 0.0000
39 Q C -0.2966
40 A C -0.9843
41 P C -1.2937
42 G C -1.4348
43 K C -2.1350
44 G C -1.0592
45 L C 0.3948
46 E C -0.3909
47 W C 0.3405
48 V C 0.0000
49 S C 0.0000
50 A C 0.0000
51 I C 0.0000
52 S C -0.5842
53 G C -1.2470
54 S C -1.2288
55 G C -1.0819
56 G C -0.7345
57 S C -0.3027
58 T C 0.1987
59 Y C 0.6074
60 Y C -0.3559
61 A C -1.1386
62 D C -2.3443
63 S C -1.7150
64 V C 0.0000
65 K C -2.3847
66 G C -1.6175
67 R C 0.0000
68 F C 0.0000
69 T C -0.6729
70 I C 0.0000
71 S C -0.5637
72 R C -1.3636
73 D C -1.9811
74 N C -2.1918
75 S C -1.7905
76 K C -2.3149
77 N C -1.6479
78 T C 0.0000
79 L C 0.0000
80 Y C -0.8496
81 L C 0.0000
82 Q C -1.2345
83 M C 0.0000
84 N C -1.3323
85 S C -1.2315
86 L C 0.0000
87 R C -2.2894
88 A C -1.5674
89 E C -2.2127
90 D C 0.0000
91 T C -0.3257
92 A C 0.0000
93 I C 1.0770
94 Y C 0.0000
95 Y C 0.4494
96 C C 0.0000
97 A C 0.0000
98 R C 0.0000
99 L C 0.0000
100 R C -3.1918
101 D C -3.3342
102 G C -2.0882
103 F C -1.2339
104 N C -2.4298
105 K C -3.1855
106 G C -1.9084
107 F C -0.9871
108 D C -1.1321
109 Y C -0.2722
110 W C 0.3276
111 G C -0.5700
112 Q C -1.4220
113 G C -0.4085
114 T C -0.0080
115 L C 1.5825
116 V C 0.0000
117 T C 0.4405
118 V C 0.0000
119 S C -0.3229
120 C C -0.1157 mutated: SC120C
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Laboratory of Theory of Biopolymers 2018