Project name: b9513ad3b2f082

Status: done

Started: 2026-05-30 14:50:30
Settings
Chain sequence(s) H: QVQLVQSGVEVKKPGASVKVSCKASGYTFTNYYMYWVRQAPGQGLEWMGGINPSNGGTNFNEKFKNRVTLTTDSSTTTAYMELKSLQFDDTAVYYCARRDYRFDMGFDYWGQGTTVTVSS
L: EIVLTQSPATLSLSPGERATLSCRASKGVSTSGYSYLHWYQQKPGQAPRLLIYLASYLESGVPARFSGSGSGTDFTLTISSLEPEDFAVYYCQHSRDLPLTFGGGTKVEIK
input PDB
Selected Chain(s) H,L
Distance of aggregation 10 Å
FoldX usage Yes
Dynamic mode No
Automated mutations No
Downloads Download all the data
Simulation log
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:00)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:00)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with all chain(s) selected           (00:00:00)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:00)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:00:00)
[INFO]       Analysis: Starting Aggrescan3D on folded.pdb                                          (00:03:10)
[INFO]       Main:     Simulation completed successfully.                                          (00:03:11)
Show buried residues

Minimal score value
-3.3468
Maximal score value
1.7425
Average score
-0.5725
Total score value
-132.2542

The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan3D score mutation
residue index residue name chain Aggrescan3D score
mutation
1 Q H -1.4548
2 V H -0.8123
3 Q H -1.2508
4 L H 0.0000
5 V H -0.5457
6 Q H 0.0000
7 S H -0.4524
8 G H 0.1947
9 V H 1.7425
11 E H 0.9103
12 V H 1.3610
13 K H -0.5559
14 K H -1.7226
15 P H -1.4010
16 G H -1.3619
17 A H -1.2246
18 S H -1.6858
19 V H 0.0000
20 K H -2.1164
21 V H 0.0000
22 S H -0.7782
23 C H 0.0000
24 K H -1.6924
25 A H 0.0000
26 S H -0.9973
27 G H -0.9839
28 Y H -0.5371
29 T H -0.4160
30 F H 0.0000
35 T H -0.8005
36 N H -1.2258
37 Y H -0.2959
38 Y H -0.0145
39 M H 0.0000
40 Y H 0.0000
41 W H 0.0000
42 V H 0.0000
43 R H 0.0000
44 Q H -0.6506
45 A H -1.0367
46 P H -1.0605
47 G H -1.2520
48 Q H -1.7532
49 G H -1.1115
50 L H 0.0000
51 E H -0.5550
52 W H 0.0000
53 M H 0.0000
54 G H 0.0000
55 G H 0.0000
56 I H 0.0000
57 N H -0.8584
58 P H -1.1359
59 S H -1.2774
62 N H -1.7725
63 G H -1.4917
64 G H -1.2785
65 T H -0.7712
66 N H -0.8965
67 F H -1.2718
68 N H -2.0314
69 E H -3.3241
70 K H -3.2364
71 F H 0.0000
72 K H -3.3468
74 N H -2.7970
75 R H -2.1217
76 V H 0.0000
77 T H -1.0777
78 L H 0.0000
79 T H -0.3655
80 T H -0.8783
81 D H -1.2147
82 S H -0.7775
83 S H -0.5947
84 T H -0.8031
85 T H -0.9564
86 T H 0.0000
87 A H 0.0000
88 Y H -0.6076
89 M H 0.0000
90 E H -1.5954
91 L H 0.0000
92 K H -2.1729
93 S H -1.6163
94 L H 0.0000
95 Q H -1.4885
96 F H 0.0726
97 D H -1.2773
98 D H 0.0000
99 T H -0.1935
100 A H 0.0000
101 V H 0.1347
102 Y H 0.0000
103 Y H 0.0000
104 C H 0.0000
105 A H 0.0000
106 R H 0.0000
107 R H 0.0000
108 D H -0.1236
109 Y H 0.4358
110 R H -0.6345
111 F H 1.0628
112 D H 0.4251
113 M H 0.2354
114 G H 0.0000
115 F H 0.0000
116 D H -0.3214
117 Y H 0.0963
118 W H -0.2918
119 G H 0.0000
120 Q H -1.4191
121 G H -0.5892
122 T H 0.0000
123 T H 0.5735
124 V H 0.0000
125 T H 0.4130
126 V H 0.0000
127 S H -0.5200
128 S H -0.4714
1 E L -1.7946
2 I L -0.6345
3 V L 0.8394
4 L L 0.0000
5 T L -0.5975
6 Q L -0.7302
7 S L -0.6268
8 P L -0.3348
9 A L -0.3911
10 T L -0.6075
11 L L -0.3048
12 S L -0.6638
13 L L -0.9021
14 S L -1.2688
15 P L -1.5660
16 G L -1.7537
17 E L -2.4660
18 R L -2.6351
19 A L 0.0000
20 T L -0.5519
21 L L 0.0000
22 S L -0.9271
23 C L 0.0000
24 R L -2.2978
25 A L -1.3302
26 S L -1.2176
27 K L -2.1008
28 G L -1.7431
29 V L 0.0000
30 S L -0.4786
31 T L -0.2222
34 S L -0.1634
35 G L -0.1160
36 Y L 0.6779
37 S L 0.0000
38 Y L -0.1148
39 L L 0.0000
40 H L 0.0000
41 W L 0.0000
42 Y L 0.0000
43 Q L 0.0000
44 Q L 0.0000
45 K L -1.1614
46 P L -1.0185
47 G L -1.3877
48 Q L -2.0219
49 A L -1.2655
50 P L 0.0000
51 R L -1.1938
52 L L 0.0000
53 L L 0.0000
54 I L 0.0000
55 Y L 0.5695
56 L L 0.0000
57 A L 0.0000
65 S L 0.2784
66 Y L 1.0162
67 L L 0.7037
68 E L -0.2338
69 S L -0.4034
70 G L -0.5099
71 V L -0.2716
72 P L -0.1517
74 A L -0.0604
75 R L -0.5792
76 F L 0.0000
77 S L 0.0579
78 G L 0.0000
79 S L -0.5731
80 G L -0.9901
83 S L -0.8361
84 G L -1.2337
85 T L -2.0487
86 D L -2.6061
87 F L 0.0000
88 T L -0.8518
89 L L 0.0000
90 T L -0.5818
91 I L 0.0000
92 S L -1.2827
93 S L -1.6397
94 L L 0.0000
95 E L -1.9880
96 P L -1.3489
97 E L -1.9693
98 D L 0.0000
99 F L 0.2324
100 A L 0.0000
101 V L -0.2215
102 Y L 0.0000
103 Y L 0.0000
104 C L 0.0000
105 Q L 0.0000
106 H L 0.0000
107 S L 0.0000
108 R L -1.9004
109 D L -1.7252
114 L L -0.8402
115 P L -0.9343
116 L L 0.0000
117 T L -0.0325
118 F L 0.2770
119 G L 0.0000
120 G L -0.6337
121 G L -0.7036
122 T L 0.0000
123 K L -1.0544
124 V L 0.0000
125 E L -0.7339
126 I L -0.1857
127 K L -1.5023
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Laboratory of Theory of Biopolymers 2018