| Chain sequence(s) |
H: QVQLVQSGVEVKKPGASVKVSCKASGYTFTNYYMYWVRQAPGQGLEWMGGINPSNGGTNFNEKFKNRVTLTTDSSTTTAYMELKSLQFDDTAVYYCARRDYRFDMGFDYWGQGTTVTVSS
L: EIVLTQSPATLSLSPGERATLSCRASKGVSTSGYSYLHWYQQKPGQAPRLLIYLASYLESGVPARFSGSGSGTDFTLTISSLEPEDFAVYYCQHSRDLPLTFGGGTKVEIK input PDB |
| Selected Chain(s) | H,L |
| Distance of aggregation | 10 Å |
| FoldX usage | Yes |
| Dynamic mode | No |
| Automated mutations | No |
| Downloads | Download all the data |
| Simulation log |
[INFO] Logger: Verbosity set to: 2 - [INFO] (00:00:00)
[WARNING] runJob: Working directory already exists (possibly overwriting previous results -ow
to prevent this behavior) (00:00:00)
[INFO] runJob: Starting aggrescan3d job on: input.pdb with all chain(s) selected (00:00:00)
[INFO] runJob: Creating pdb object from: input.pdb (00:00:00)
[INFO] FoldX: Starting FoldX energy minimalization (00:00:00)
[INFO] Analysis: Starting Aggrescan3D on folded.pdb (00:03:10)
[INFO] Main: Simulation completed successfully. (00:03:11)
|
The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.
| residue index | residue name | chain | Aggrescan3D score | mutation |
|---|---|---|---|---|
| residue index | residue name | chain | Aggrescan3D score | |
| 1 | Q | H | -1.4548 | |
| 2 | V | H | -0.8123 | |
| 3 | Q | H | -1.2508 | |
| 4 | L | H | 0.0000 | |
| 5 | V | H | -0.5457 | |
| 6 | Q | H | 0.0000 | |
| 7 | S | H | -0.4524 | |
| 8 | G | H | 0.1947 | |
| 9 | V | H | 1.7425 | |
| 11 | E | H | 0.9103 | |
| 12 | V | H | 1.3610 | |
| 13 | K | H | -0.5559 | |
| 14 | K | H | -1.7226 | |
| 15 | P | H | -1.4010 | |
| 16 | G | H | -1.3619 | |
| 17 | A | H | -1.2246 | |
| 18 | S | H | -1.6858 | |
| 19 | V | H | 0.0000 | |
| 20 | K | H | -2.1164 | |
| 21 | V | H | 0.0000 | |
| 22 | S | H | -0.7782 | |
| 23 | C | H | 0.0000 | |
| 24 | K | H | -1.6924 | |
| 25 | A | H | 0.0000 | |
| 26 | S | H | -0.9973 | |
| 27 | G | H | -0.9839 | |
| 28 | Y | H | -0.5371 | |
| 29 | T | H | -0.4160 | |
| 30 | F | H | 0.0000 | |
| 35 | T | H | -0.8005 | |
| 36 | N | H | -1.2258 | |
| 37 | Y | H | -0.2959 | |
| 38 | Y | H | -0.0145 | |
| 39 | M | H | 0.0000 | |
| 40 | Y | H | 0.0000 | |
| 41 | W | H | 0.0000 | |
| 42 | V | H | 0.0000 | |
| 43 | R | H | 0.0000 | |
| 44 | Q | H | -0.6506 | |
| 45 | A | H | -1.0367 | |
| 46 | P | H | -1.0605 | |
| 47 | G | H | -1.2520 | |
| 48 | Q | H | -1.7532 | |
| 49 | G | H | -1.1115 | |
| 50 | L | H | 0.0000 | |
| 51 | E | H | -0.5550 | |
| 52 | W | H | 0.0000 | |
| 53 | M | H | 0.0000 | |
| 54 | G | H | 0.0000 | |
| 55 | G | H | 0.0000 | |
| 56 | I | H | 0.0000 | |
| 57 | N | H | -0.8584 | |
| 58 | P | H | -1.1359 | |
| 59 | S | H | -1.2774 | |
| 62 | N | H | -1.7725 | |
| 63 | G | H | -1.4917 | |
| 64 | G | H | -1.2785 | |
| 65 | T | H | -0.7712 | |
| 66 | N | H | -0.8965 | |
| 67 | F | H | -1.2718 | |
| 68 | N | H | -2.0314 | |
| 69 | E | H | -3.3241 | |
| 70 | K | H | -3.2364 | |
| 71 | F | H | 0.0000 | |
| 72 | K | H | -3.3468 | |
| 74 | N | H | -2.7970 | |
| 75 | R | H | -2.1217 | |
| 76 | V | H | 0.0000 | |
| 77 | T | H | -1.0777 | |
| 78 | L | H | 0.0000 | |
| 79 | T | H | -0.3655 | |
| 80 | T | H | -0.8783 | |
| 81 | D | H | -1.2147 | |
| 82 | S | H | -0.7775 | |
| 83 | S | H | -0.5947 | |
| 84 | T | H | -0.8031 | |
| 85 | T | H | -0.9564 | |
| 86 | T | H | 0.0000 | |
| 87 | A | H | 0.0000 | |
| 88 | Y | H | -0.6076 | |
| 89 | M | H | 0.0000 | |
| 90 | E | H | -1.5954 | |
| 91 | L | H | 0.0000 | |
| 92 | K | H | -2.1729 | |
| 93 | S | H | -1.6163 | |
| 94 | L | H | 0.0000 | |
| 95 | Q | H | -1.4885 | |
| 96 | F | H | 0.0726 | |
| 97 | D | H | -1.2773 | |
| 98 | D | H | 0.0000 | |
| 99 | T | H | -0.1935 | |
| 100 | A | H | 0.0000 | |
| 101 | V | H | 0.1347 | |
| 102 | Y | H | 0.0000 | |
| 103 | Y | H | 0.0000 | |
| 104 | C | H | 0.0000 | |
| 105 | A | H | 0.0000 | |
| 106 | R | H | 0.0000 | |
| 107 | R | H | 0.0000 | |
| 108 | D | H | -0.1236 | |
| 109 | Y | H | 0.4358 | |
| 110 | R | H | -0.6345 | |
| 111 | F | H | 1.0628 | |
| 112 | D | H | 0.4251 | |
| 113 | M | H | 0.2354 | |
| 114 | G | H | 0.0000 | |
| 115 | F | H | 0.0000 | |
| 116 | D | H | -0.3214 | |
| 117 | Y | H | 0.0963 | |
| 118 | W | H | -0.2918 | |
| 119 | G | H | 0.0000 | |
| 120 | Q | H | -1.4191 | |
| 121 | G | H | -0.5892 | |
| 122 | T | H | 0.0000 | |
| 123 | T | H | 0.5735 | |
| 124 | V | H | 0.0000 | |
| 125 | T | H | 0.4130 | |
| 126 | V | H | 0.0000 | |
| 127 | S | H | -0.5200 | |
| 128 | S | H | -0.4714 | |
| 1 | E | L | -1.7946 | |
| 2 | I | L | -0.6345 | |
| 3 | V | L | 0.8394 | |
| 4 | L | L | 0.0000 | |
| 5 | T | L | -0.5975 | |
| 6 | Q | L | -0.7302 | |
| 7 | S | L | -0.6268 | |
| 8 | P | L | -0.3348 | |
| 9 | A | L | -0.3911 | |
| 10 | T | L | -0.6075 | |
| 11 | L | L | -0.3048 | |
| 12 | S | L | -0.6638 | |
| 13 | L | L | -0.9021 | |
| 14 | S | L | -1.2688 | |
| 15 | P | L | -1.5660 | |
| 16 | G | L | -1.7537 | |
| 17 | E | L | -2.4660 | |
| 18 | R | L | -2.6351 | |
| 19 | A | L | 0.0000 | |
| 20 | T | L | -0.5519 | |
| 21 | L | L | 0.0000 | |
| 22 | S | L | -0.9271 | |
| 23 | C | L | 0.0000 | |
| 24 | R | L | -2.2978 | |
| 25 | A | L | -1.3302 | |
| 26 | S | L | -1.2176 | |
| 27 | K | L | -2.1008 | |
| 28 | G | L | -1.7431 | |
| 29 | V | L | 0.0000 | |
| 30 | S | L | -0.4786 | |
| 31 | T | L | -0.2222 | |
| 34 | S | L | -0.1634 | |
| 35 | G | L | -0.1160 | |
| 36 | Y | L | 0.6779 | |
| 37 | S | L | 0.0000 | |
| 38 | Y | L | -0.1148 | |
| 39 | L | L | 0.0000 | |
| 40 | H | L | 0.0000 | |
| 41 | W | L | 0.0000 | |
| 42 | Y | L | 0.0000 | |
| 43 | Q | L | 0.0000 | |
| 44 | Q | L | 0.0000 | |
| 45 | K | L | -1.1614 | |
| 46 | P | L | -1.0185 | |
| 47 | G | L | -1.3877 | |
| 48 | Q | L | -2.0219 | |
| 49 | A | L | -1.2655 | |
| 50 | P | L | 0.0000 | |
| 51 | R | L | -1.1938 | |
| 52 | L | L | 0.0000 | |
| 53 | L | L | 0.0000 | |
| 54 | I | L | 0.0000 | |
| 55 | Y | L | 0.5695 | |
| 56 | L | L | 0.0000 | |
| 57 | A | L | 0.0000 | |
| 65 | S | L | 0.2784 | |
| 66 | Y | L | 1.0162 | |
| 67 | L | L | 0.7037 | |
| 68 | E | L | -0.2338 | |
| 69 | S | L | -0.4034 | |
| 70 | G | L | -0.5099 | |
| 71 | V | L | -0.2716 | |
| 72 | P | L | -0.1517 | |
| 74 | A | L | -0.0604 | |
| 75 | R | L | -0.5792 | |
| 76 | F | L | 0.0000 | |
| 77 | S | L | 0.0579 | |
| 78 | G | L | 0.0000 | |
| 79 | S | L | -0.5731 | |
| 80 | G | L | -0.9901 | |
| 83 | S | L | -0.8361 | |
| 84 | G | L | -1.2337 | |
| 85 | T | L | -2.0487 | |
| 86 | D | L | -2.6061 | |
| 87 | F | L | 0.0000 | |
| 88 | T | L | -0.8518 | |
| 89 | L | L | 0.0000 | |
| 90 | T | L | -0.5818 | |
| 91 | I | L | 0.0000 | |
| 92 | S | L | -1.2827 | |
| 93 | S | L | -1.6397 | |
| 94 | L | L | 0.0000 | |
| 95 | E | L | -1.9880 | |
| 96 | P | L | -1.3489 | |
| 97 | E | L | -1.9693 | |
| 98 | D | L | 0.0000 | |
| 99 | F | L | 0.2324 | |
| 100 | A | L | 0.0000 | |
| 101 | V | L | -0.2215 | |
| 102 | Y | L | 0.0000 | |
| 103 | Y | L | 0.0000 | |
| 104 | C | L | 0.0000 | |
| 105 | Q | L | 0.0000 | |
| 106 | H | L | 0.0000 | |
| 107 | S | L | 0.0000 | |
| 108 | R | L | -1.9004 | |
| 109 | D | L | -1.7252 | |
| 114 | L | L | -0.8402 | |
| 115 | P | L | -0.9343 | |
| 116 | L | L | 0.0000 | |
| 117 | T | L | -0.0325 | |
| 118 | F | L | 0.2770 | |
| 119 | G | L | 0.0000 | |
| 120 | G | L | -0.6337 | |
| 121 | G | L | -0.7036 | |
| 122 | T | L | 0.0000 | |
| 123 | K | L | -1.0544 | |
| 124 | V | L | 0.0000 | |
| 125 | E | L | -0.7339 | |
| 126 | I | L | -0.1857 | |
| 127 | K | L | -1.5023 |