| Chain sequence(s) |
H: VQLVESGGGVVQPGRSLRLSCAASGFTFSNYGMHWVRQAPGKGLDWVAVISYDGSDKYYADSVKGRFTISRDNSKNTLYLQMNSLRAEDTAVYYCAKDRGTPLAGDYYFDYWGQGTLVTVSS
L: QSALTQPPSASGSPGQSVTISCTGTSSDVGGYNYVSWYQQHPGKAPKLIIYEVTNRPSGVPDRFSGSKSGNTASLTVSGLQAEDEADYYCSSYAGSNNWVFGGGTK input PDB |
| Selected Chain(s) | H,L |
| Distance of aggregation | 10 Å |
| FoldX usage | Yes |
| Dynamic mode | No |
| Automated mutations | No |
| Downloads | Download all the data |
| Simulation log |
[INFO] Logger: Verbosity set to: 2 - [INFO] (00:00:01)
[WARNING] runJob: Working directory already exists (possibly overwriting previous results -ow
to prevent this behavior) (00:00:01)
[INFO] runJob: Starting aggrescan3d job on: input.pdb with all chain(s) selected (00:00:01)
[INFO] runJob: Creating pdb object from: input.pdb (00:00:01)
[INFO] FoldX: Starting FoldX energy minimalization (00:00:01)
[INFO] Analysis: Starting Aggrescan3D on folded.pdb (00:01:53)
[INFO] Main: Simulation completed successfully. (00:01:55)
|
The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.
| residue index | residue name | chain | Aggrescan3D score | mutation |
|---|---|---|---|---|
| residue index | residue name | chain | Aggrescan3D score | |
| 2 | V | H | 0.8937 | |
| 3 | Q | H | -0.4159 | |
| 4 | L | H | 0.0000 | |
| 5 | V | H | 0.0464 | |
| 6 | E | H | 0.0000 | |
| 7 | S | H | -0.3265 | |
| 8 | G | H | -0.5158 | |
| 9 | G | H | 0.3229 | |
| 11 | G | H | 0.9468 | |
| 12 | V | H | 1.7750 | |
| 13 | V | H | -0.0169 | |
| 14 | Q | H | -1.2185 | |
| 15 | P | H | -1.8330 | |
| 16 | G | H | -2.0683 | |
| 17 | R | H | -2.6051 | |
| 18 | S | H | -1.5836 | |
| 19 | L | H | -0.7462 | |
| 20 | R | H | -1.0868 | |
| 21 | L | H | 0.0000 | |
| 22 | S | H | -0.3174 | |
| 23 | C | H | 0.0000 | |
| 24 | A | H | -0.4524 | |
| 25 | A | H | 0.0000 | |
| 26 | S | H | -0.2873 | |
| 27 | G | H | -0.1041 | |
| 28 | F | H | 0.0837 | |
| 29 | T | H | -0.2008 | |
| 30 | F | H | 0.0000 | |
| 35 | S | H | -1.1357 | |
| 36 | N | H | -0.8747 | |
| 37 | Y | H | -0.3296 | |
| 38 | G | H | 0.0000 | |
| 39 | M | H | 0.0000 | |
| 40 | H | H | 0.0000 | |
| 41 | W | H | 0.0000 | |
| 42 | V | H | 0.0000 | |
| 43 | R | H | 0.0000 | |
| 44 | Q | H | -0.5567 | |
| 45 | A | H | -0.9964 | |
| 46 | P | H | -0.8073 | |
| 47 | G | H | -1.4790 | |
| 48 | K | H | -2.2248 | |
| 49 | G | H | -1.3997 | |
| 50 | L | H | 0.0000 | |
| 51 | D | H | -0.7332 | |
| 52 | W | H | 0.0000 | |
| 53 | V | H | 0.0000 | |
| 54 | A | H | 0.0000 | |
| 55 | V | H | 0.0000 | |
| 56 | I | H | 0.0000 | |
| 57 | S | H | -0.7169 | |
| 58 | Y | H | -0.5388 | |
| 59 | D | H | -2.0082 | |
| 62 | G | H | -1.5153 | |
| 63 | S | H | -1.3011 | |
| 64 | D | H | -1.5719 | |
| 65 | K | H | -1.1308 | |
| 66 | Y | H | -0.5595 | |
| 67 | Y | H | -0.8371 | |
| 68 | A | H | 0.0000 | |
| 69 | D | H | -2.4987 | |
| 70 | S | H | -1.8097 | |
| 71 | V | H | 0.0000 | |
| 72 | K | H | -2.0511 | |
| 74 | G | H | -1.4820 | |
| 75 | R | H | -1.2483 | |
| 76 | F | H | 0.0000 | |
| 77 | T | H | -0.6590 | |
| 78 | I | H | 0.0000 | |
| 79 | S | H | -0.7220 | |
| 80 | R | H | -1.0315 | |
| 81 | D | H | -1.6037 | |
| 82 | N | H | -1.8118 | |
| 83 | S | H | -1.4912 | |
| 84 | K | H | -2.2978 | |
| 85 | N | H | -1.6407 | |
| 86 | T | H | -1.0100 | |
| 87 | L | H | 0.0000 | |
| 88 | Y | H | -0.2816 | |
| 89 | L | H | 0.0000 | |
| 90 | Q | H | -0.7093 | |
| 91 | M | H | 0.0000 | |
| 92 | N | H | -1.6041 | |
| 93 | S | H | -1.6806 | |
| 94 | L | H | 0.0000 | |
| 95 | R | H | -2.4157 | |
| 96 | A | H | -1.6175 | |
| 97 | E | H | -2.2350 | |
| 98 | D | H | 0.0000 | |
| 99 | T | H | -0.3178 | |
| 100 | A | H | 0.0000 | |
| 101 | V | H | 0.7947 | |
| 102 | Y | H | 0.0000 | |
| 103 | Y | H | 0.0000 | |
| 104 | C | H | 0.0000 | |
| 105 | A | H | 0.0000 | |
| 106 | K | H | 0.0000 | |
| 107 | D | H | 0.0000 | |
| 108 | R | H | -1.3822 | |
| 109 | G | H | -0.5853 | |
| 110 | T | H | -0.1623 | |
| 111 | P | H | 0.2814 | |
| 111A | L | H | 1.4565 | |
| 112B | A | H | 0.4031 | |
| 112A | G | H | 0.1014 | |
| 112 | D | H | -0.5410 | |
| 113 | Y | H | -0.1228 | |
| 114 | Y | H | 0.0000 | |
| 115 | F | H | 0.0000 | |
| 116 | D | H | -0.3491 | |
| 117 | Y | H | 0.4885 | |
| 118 | W | H | -0.0085 | |
| 119 | G | H | 0.0000 | |
| 120 | Q | H | -1.4748 | |
| 121 | G | H | -0.3872 | |
| 122 | T | H | 0.4584 | |
| 123 | L | H | 1.6999 | |
| 124 | V | H | 0.0000 | |
| 125 | T | H | 0.5010 | |
| 126 | V | H | 0.0000 | |
| 127 | S | H | -0.4648 | |
| 128 | S | H | -0.4708 | |
| 1 | Q | L | -1.6006 | |
| 2 | S | L | -0.8232 | |
| 3 | A | L | -0.5842 | |
| 4 | L | L | 0.0000 | |
| 5 | T | L | -0.3663 | |
| 6 | Q | L | -0.6583 | |
| 7 | P | L | -0.7190 | |
| 8 | P | L | -1.0083 | |
| 9 | S | L | -1.1767 | |
| 11 | A | L | -0.8261 | |
| 12 | S | L | -1.0966 | |
| 13 | G | L | -1.1012 | |
| 14 | S | L | -1.0883 | |
| 15 | P | L | -1.3003 | |
| 16 | G | L | -1.5053 | |
| 17 | Q | L | -1.8634 | |
| 18 | S | L | -1.0624 | |
| 19 | V | L | -0.3857 | |
| 20 | T | L | -0.1458 | |
| 21 | I | L | 0.0000 | |
| 22 | S | L | -0.2619 | |
| 23 | C | L | 0.0000 | |
| 24 | T | L | -0.5421 | |
| 25 | G | L | -0.6005 | |
| 26 | T | L | -0.6653 | |
| 27 | S | L | -0.7938 | |
| 28 | S | L | -0.5528 | |
| 29 | D | L | 0.0000 | |
| 30 | V | L | 0.0000 | |
| 31 | G | L | -1.2126 | |
| 35 | G | L | -0.9133 | |
| 36 | Y | L | -0.5962 | |
| 37 | N | L | -1.3163 | |
| 38 | Y | L | -0.4266 | |
| 39 | V | L | 0.0000 | |
| 40 | S | L | 0.0000 | |
| 41 | W | L | 0.0000 | |
| 42 | Y | L | 0.0000 | |
| 43 | Q | L | 0.0000 | |
| 44 | Q | L | 0.0000 | |
| 45 | H | L | -1.9215 | |
| 46 | P | L | -1.4734 | |
| 47 | G | L | -1.6239 | |
| 48 | K | L | -2.4751 | |
| 49 | A | L | -1.4339 | |
| 50 | P | L | 0.0000 | |
| 51 | K | L | -0.9656 | |
| 52 | L | L | 0.0000 | |
| 53 | I | L | 0.0000 | |
| 54 | I | L | 0.0000 | |
| 55 | Y | L | -0.9880 | |
| 56 | E | L | -1.1885 | |
| 57 | V | L | 0.0000 | |
| 65 | T | L | -1.1829 | |
| 66 | N | L | -1.6681 | |
| 67 | R | L | -1.8298 | |
| 68 | P | L | -0.9940 | |
| 69 | S | L | -0.7488 | |
| 70 | G | L | -0.8561 | |
| 71 | V | L | -0.9751 | |
| 72 | P | L | -1.2940 | |
| 74 | D | L | -2.2101 | |
| 75 | R | L | -1.3921 | |
| 76 | F | L | 0.0000 | |
| 77 | S | L | -1.0114 | |
| 78 | G | L | 0.0000 | |
| 79 | S | L | -0.8816 | |
| 80 | K | L | -1.2436 | |
| 83 | S | L | -0.9369 | |
| 84 | G | L | -1.1832 | |
| 85 | N | L | -1.2890 | |
| 86 | T | L | -0.8719 | |
| 87 | A | L | 0.0000 | |
| 88 | S | L | -0.3796 | |
| 89 | L | L | 0.0000 | |
| 90 | T | L | -0.1987 | |
| 91 | V | L | 0.0000 | |
| 92 | S | L | -1.1711 | |
| 93 | G | L | -1.3930 | |
| 94 | L | L | -1.6683 | |
| 95 | Q | L | -2.0702 | |
| 96 | A | L | -1.8127 | |
| 97 | E | L | -2.6579 | |
| 98 | D | L | 0.0000 | |
| 99 | E | L | -2.9733 | |
| 100 | A | L | -2.1313 | |
| 101 | D | L | -1.4586 | |
| 102 | Y | L | 0.0000 | |
| 103 | Y | L | 0.0000 | |
| 104 | C | L | 0.0000 | |
| 105 | S | L | 0.0000 | |
| 106 | S | L | 0.0000 | |
| 107 | Y | L | -0.1173 | |
| 108 | A | L | -0.2227 | |
| 109 | G | L | -0.3414 | |
| 113 | S | L | -0.3496 | |
| 114 | N | L | -0.5444 | |
| 115 | N | L | -0.5082 | |
| 116 | W | L | 0.0000 | |
| 117 | V | L | 0.0000 | |
| 118 | F | L | 0.0000 | |
| 119 | G | L | 0.0000 | |
| 120 | G | L | -1.1133 | |
| 121 | G | L | 0.0000 | |
| 122 | T | L | 0.0000 | |
| 123 | K | L | -2.3447 |