Project name: query_structure

Status: done

Started: 2026-03-17 00:43:54
Settings
Chain sequence(s) A: QVQLVESGGGLVQAGGSLRLSCAASGFPVTNSYMAWYRQAPGKEREWVAAISSWGRHTYYADSVKGRFTISRDNAKNTVYLQMNSLKPEDTAVYYCNVKDSGWEARWYDYWGQGTQVTVS
input PDB
Selected Chain(s) A
Distance of aggregation 10 Å
FoldX usage Yes
Dynamic mode No
Automated mutations No
Downloads Download all the data
Simulation log
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:00)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:00)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with A chain(s) selected             (00:00:00)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:00)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:00:00)
[INFO]       Analysis: Starting Aggrescan3D on folded.pdb                                          (00:01:52)
[INFO]       Main:     Simulation completed successfully.                                          (00:01:53)
Show buried residues

Minimal score value
-3.3546
Maximal score value
1.0274
Average score
-0.785
Total score value
-94.2024

The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan3D score mutation
residue index residue name chain Aggrescan3D score
mutation
1 Q A -1.4737
2 V A -0.8047
3 Q A -0.9337
4 L A 0.0000
5 V A 1.0274
6 E A 0.0000
7 S A -0.5901
8 G A -1.0384
9 G A -0.8451
10 G A -0.1130
11 L A 0.9237
12 V A 0.0000
13 Q A -1.2687
14 A A -1.3510
15 G A -1.2827
16 G A -0.8773
17 S A -1.2195
18 L A -0.9496
19 R A -2.1371
20 L A 0.0000
21 S A -0.3898
22 C A 0.0000
23 A A -0.1067
24 A A 0.0000
25 S A -0.7070
26 G A -1.0271
27 F A -0.6295
28 P A -0.8894
29 V A 0.0000
30 T A -0.5085
31 N A -1.0718
32 S A 0.0000
33 Y A -0.5190
34 M A 0.0000
35 A A 0.0000
36 W A 0.0000
37 Y A -0.2489
38 R A 0.0000
39 Q A -1.8509
40 A A -1.8327
41 P A -1.3095
42 G A -1.7948
43 K A -2.9456
44 E A -3.3546
45 R A -2.6624
46 E A -1.4433
47 W A -0.3178
48 V A 0.0000
49 A A 0.0000
50 A A 0.0000
51 I A 0.0000
52 S A -0.8775
53 S A -0.7558
54 W A -0.1504
55 G A -1.1689
56 R A -2.0910
57 H A -1.6487
58 T A -0.5812
59 Y A 0.1697
60 Y A -0.4995
61 A A -1.1555
62 D A -2.3637
63 S A -1.7956
64 V A 0.0000
65 K A -2.5525
66 G A -1.8224
67 R A -1.5210
68 F A 0.0000
69 T A -0.7865
70 I A 0.0000
71 S A -0.4782
72 R A -0.8847
73 D A -1.5361
74 N A -1.6901
75 A A -1.4424
76 K A -2.2666
77 N A -1.6441
78 T A 0.0000
79 V A 0.0000
80 Y A -0.6539
81 L A 0.0000
82 Q A -1.2417
83 M A 0.0000
84 N A -1.4459
85 S A -1.1700
86 L A 0.0000
87 K A -2.0426
88 P A -1.7909
89 E A -2.2496
90 D A 0.0000
91 T A -0.9054
92 A A 0.0000
93 V A -0.5563
94 Y A 0.0000
95 Y A -0.1075
96 C A 0.0000
97 N A 0.0000
98 V A 0.0000
99 K A -1.2305
100 D A -1.5137
101 S A -0.9630
102 G A -0.9573
103 W A -0.1419
104 E A -1.7584
105 A A -1.2153
106 R A -1.8900
107 W A -0.4899
108 Y A -0.4809
109 D A -1.4844
110 Y A -0.5383
111 W A -0.0909
112 G A -0.0585
113 Q A -0.9216
114 G A 0.0000
115 T A 0.0000
116 Q A -1.1459
117 V A 0.0000
118 T A -0.3229
119 V A 0.0000
120 S A -0.7497
Download PDB file
View in 3Dmol
Play the video

Laboratory of Theory of Biopolymers 2018