| Chain sequence(s) |
A: QVQLVESGGGLVQAGGSLRLSCAASGFPVTNSYMAWYRQAPGKEREWVAAISSWGRHTYYADSVKGRFTISRDNAKNTVYLQMNSLKPEDTAVYYCNVKDSGWEARWYDYWGQGTQVTVS
input PDB |
| Selected Chain(s) | A |
| Distance of aggregation | 10 Å |
| FoldX usage | Yes |
| Dynamic mode | No |
| Automated mutations | No |
| Downloads | Download all the data |
| Simulation log |
[INFO] Logger: Verbosity set to: 2 - [INFO] (00:00:00)
[WARNING] runJob: Working directory already exists (possibly overwriting previous results -ow
to prevent this behavior) (00:00:00)
[INFO] runJob: Starting aggrescan3d job on: input.pdb with A chain(s) selected (00:00:00)
[INFO] runJob: Creating pdb object from: input.pdb (00:00:00)
[INFO] FoldX: Starting FoldX energy minimalization (00:00:00)
[INFO] Analysis: Starting Aggrescan3D on folded.pdb (00:01:52)
[INFO] Main: Simulation completed successfully. (00:01:53)
|
The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.
| residue index | residue name | chain | Aggrescan3D score | mutation |
|---|---|---|---|---|
| residue index | residue name | chain | Aggrescan3D score | |
| 1 | Q | A | -1.4737 | |
| 2 | V | A | -0.8047 | |
| 3 | Q | A | -0.9337 | |
| 4 | L | A | 0.0000 | |
| 5 | V | A | 1.0274 | |
| 6 | E | A | 0.0000 | |
| 7 | S | A | -0.5901 | |
| 8 | G | A | -1.0384 | |
| 9 | G | A | -0.8451 | |
| 10 | G | A | -0.1130 | |
| 11 | L | A | 0.9237 | |
| 12 | V | A | 0.0000 | |
| 13 | Q | A | -1.2687 | |
| 14 | A | A | -1.3510 | |
| 15 | G | A | -1.2827 | |
| 16 | G | A | -0.8773 | |
| 17 | S | A | -1.2195 | |
| 18 | L | A | -0.9496 | |
| 19 | R | A | -2.1371 | |
| 20 | L | A | 0.0000 | |
| 21 | S | A | -0.3898 | |
| 22 | C | A | 0.0000 | |
| 23 | A | A | -0.1067 | |
| 24 | A | A | 0.0000 | |
| 25 | S | A | -0.7070 | |
| 26 | G | A | -1.0271 | |
| 27 | F | A | -0.6295 | |
| 28 | P | A | -0.8894 | |
| 29 | V | A | 0.0000 | |
| 30 | T | A | -0.5085 | |
| 31 | N | A | -1.0718 | |
| 32 | S | A | 0.0000 | |
| 33 | Y | A | -0.5190 | |
| 34 | M | A | 0.0000 | |
| 35 | A | A | 0.0000 | |
| 36 | W | A | 0.0000 | |
| 37 | Y | A | -0.2489 | |
| 38 | R | A | 0.0000 | |
| 39 | Q | A | -1.8509 | |
| 40 | A | A | -1.8327 | |
| 41 | P | A | -1.3095 | |
| 42 | G | A | -1.7948 | |
| 43 | K | A | -2.9456 | |
| 44 | E | A | -3.3546 | |
| 45 | R | A | -2.6624 | |
| 46 | E | A | -1.4433 | |
| 47 | W | A | -0.3178 | |
| 48 | V | A | 0.0000 | |
| 49 | A | A | 0.0000 | |
| 50 | A | A | 0.0000 | |
| 51 | I | A | 0.0000 | |
| 52 | S | A | -0.8775 | |
| 53 | S | A | -0.7558 | |
| 54 | W | A | -0.1504 | |
| 55 | G | A | -1.1689 | |
| 56 | R | A | -2.0910 | |
| 57 | H | A | -1.6487 | |
| 58 | T | A | -0.5812 | |
| 59 | Y | A | 0.1697 | |
| 60 | Y | A | -0.4995 | |
| 61 | A | A | -1.1555 | |
| 62 | D | A | -2.3637 | |
| 63 | S | A | -1.7956 | |
| 64 | V | A | 0.0000 | |
| 65 | K | A | -2.5525 | |
| 66 | G | A | -1.8224 | |
| 67 | R | A | -1.5210 | |
| 68 | F | A | 0.0000 | |
| 69 | T | A | -0.7865 | |
| 70 | I | A | 0.0000 | |
| 71 | S | A | -0.4782 | |
| 72 | R | A | -0.8847 | |
| 73 | D | A | -1.5361 | |
| 74 | N | A | -1.6901 | |
| 75 | A | A | -1.4424 | |
| 76 | K | A | -2.2666 | |
| 77 | N | A | -1.6441 | |
| 78 | T | A | 0.0000 | |
| 79 | V | A | 0.0000 | |
| 80 | Y | A | -0.6539 | |
| 81 | L | A | 0.0000 | |
| 82 | Q | A | -1.2417 | |
| 83 | M | A | 0.0000 | |
| 84 | N | A | -1.4459 | |
| 85 | S | A | -1.1700 | |
| 86 | L | A | 0.0000 | |
| 87 | K | A | -2.0426 | |
| 88 | P | A | -1.7909 | |
| 89 | E | A | -2.2496 | |
| 90 | D | A | 0.0000 | |
| 91 | T | A | -0.9054 | |
| 92 | A | A | 0.0000 | |
| 93 | V | A | -0.5563 | |
| 94 | Y | A | 0.0000 | |
| 95 | Y | A | -0.1075 | |
| 96 | C | A | 0.0000 | |
| 97 | N | A | 0.0000 | |
| 98 | V | A | 0.0000 | |
| 99 | K | A | -1.2305 | |
| 100 | D | A | -1.5137 | |
| 101 | S | A | -0.9630 | |
| 102 | G | A | -0.9573 | |
| 103 | W | A | -0.1419 | |
| 104 | E | A | -1.7584 | |
| 105 | A | A | -1.2153 | |
| 106 | R | A | -1.8900 | |
| 107 | W | A | -0.4899 | |
| 108 | Y | A | -0.4809 | |
| 109 | D | A | -1.4844 | |
| 110 | Y | A | -0.5383 | |
| 111 | W | A | -0.0909 | |
| 112 | G | A | -0.0585 | |
| 113 | Q | A | -0.9216 | |
| 114 | G | A | 0.0000 | |
| 115 | T | A | 0.0000 | |
| 116 | Q | A | -1.1459 | |
| 117 | V | A | 0.0000 | |
| 118 | T | A | -0.3229 | |
| 119 | V | A | 0.0000 | |
| 120 | S | A | -0.7497 |