Project name: TEST_A

Status: done

Started: 2024-11-20 22:06:17
Settings
Chain sequence(s) A: YADAIFTNSYRKVL
input PDB
Selected Chain(s) A
Distance of aggregation 10 Å
FoldX usage Yes
Dynamic mode No
Automated mutations No
Downloads Download all the data
Simulation log
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:00)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:00)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with A chain(s) selected             (00:00:00)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:00)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:00:00)
[INFO]       Analysis: Starting Aggrescan3D on folded.pdb                                          (00:00:05)
[INFO]       Main:     Simulation completed successfully.                                          (00:00:05)
Show buried residues

Minimal score value
-0.8949
Maximal score value
2.5687
Average score
0.8741
Total score value
12.2369

The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan3D score mutation
residue index residue name chain Aggrescan3D score
mutation
1 Y A 1.2642
2 A A 0.7996
3 D A -0.0063
4 A A 1.1645
5 I A 2.5687
6 F A 2.1311
7 T A 0.7280
8 N A 0.2262
9 S A 0.7861
10 Y A 1.3976
11 R A -0.8949
12 K A -0.8045
13 V A 1.4217
14 L A 1.4549
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Laboratory of Theory of Biopolymers 2018