Project name: Npl3-RRM1

Status: done

Started: 2025-12-31 14:39:03
Settings
Chain sequence(s) A: ELSNTRLFVRPFPLDVQESELNEIFGPFGPMKEVKILNGFAFVEFEEAESAAKAIEEVHGKSFANQPLEVVYSK
input PDB
Selected Chain(s) A
Distance of aggregation 10 Å
FoldX usage Yes
Dynamic mode No
Automated mutations No
Downloads Download all the data
Simulation log
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:01)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:01)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with A chain(s) selected             (00:00:01)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:01)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:00:01)
[INFO]       Analysis: Starting Aggrescan3D on folded.pdb                                          (00:01:49)
[INFO]       Main:     Simulation completed successfully.                                          (00:01:50)
Show buried residues

Minimal score value
-4.1128
Maximal score value
0.9999
Average score
-1.3081
Total score value
-96.7997

The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan3D score mutation
residue index residue name chain Aggrescan3D score
mutation
7 E A -1.5883
8 L A -0.1961
9 S A -1.1190
10 N A -2.3069
11 T A -2.6149
12 R A -1.8911
13 L A 0.0000
14 F A 0.3195
15 V A 0.0000
16 R A -0.2134
17 P A 0.1348
18 F A 0.0000
19 P A -0.4755
20 L A 0.2675
21 D A -1.6617
22 V A 0.0000
23 Q A -2.5713
24 E A -3.1656
25 S A -2.3897
26 E A -2.4305
27 L A 0.0000
28 N A -1.9633
29 E A -2.4446
30 I A -1.1217
31 F A 0.0000
32 G A -1.0038
33 P A -0.5514
34 F A -0.8065
35 G A -1.4044
36 P A -1.8079
37 M A -2.2497
38 K A -3.6616
39 E A -3.3688
40 V A -2.0430
41 K A -1.2998
42 I A -0.4885
43 L A 0.0091
44 N A -0.5729
45 G A -0.0825
46 F A 0.9999
47 A A 0.0000
48 F A 0.0051
49 V A 0.0000
50 E A -2.6639
51 F A 0.0000
52 E A -4.1128
53 E A -3.5143
54 A A -2.8349
55 E A -3.0501
56 S A 0.0000
57 A A 0.0000
58 A A -2.2995
59 K A -3.0486
60 A A 0.0000
61 I A -2.1033
62 E A -3.4694
63 E A -3.6342
64 V A 0.0000
65 H A -2.8894
66 G A -2.4017
67 K A -2.3879
68 S A -1.5376
69 F A -0.9672
70 A A -0.9455
71 N A -1.7241
72 Q A -1.9612
73 P A -1.7637
74 L A 0.0000
75 E A -2.1100
76 V A 0.0000
77 V A 0.2566
78 Y A -0.1365
79 S A 0.0000
80 K A -1.7420
Download PDB file
View in 3Dmol
Play the video

Laboratory of Theory of Biopolymers 2018