Chain sequence(s) |
A: KNWNKNWNKLLKNW
input PDB |
Selected Chain(s) | A |
Distance of aggregation | 10 Å |
FoldX usage | Yes |
Dynamic mode | No |
Automated mutations | No |
Mutated residues | NA8A,NA2A,NA4A,NA13A,NA6A |
Energy difference between WT (input) and mutated protein (by FoldX) | 0.471438 kcal/mol |
Downloads | Download all the data |
Simulation log |
[INFO] Logger: Verbosity set to: 2 - [INFO] (00:00:00) [WARNING] runJob: Working directory already exists (possibly overwriting previous results -ow to prevent this behavior) (00:00:00) [INFO] runJob: Starting aggrescan3d job on: input.pdb with A chain(s) selected (00:00:00) [INFO] runJob: Creating pdb object from: input.pdb (00:00:00) [INFO] FoldX: Starting FoldX energy minimalization (00:00:00) [INFO] FoldX: Building mutant model (00:00:09) [INFO] FoldX: Starting FoldX energy minimalization (00:01:04) [INFO] Analysis: Starting Aggrescan3D on folded.pdb (00:01:18) [INFO] Main: Simulation completed successfully. (00:01:18) |
The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.
residue index | residue name | chain | Aggrescan3D score | mutation |
---|---|---|---|---|
residue index | residue name | chain | Aggrescan3D score | |
1 | K | A | -1.6572 | |
2 | A | A | -0.6640 | mutated: NA2A |
3 | W | A | 0.1439 | |
4 | A | A | -0.7198 | mutated: NA4A |
5 | K | A | -1.7406 | |
6 | A | A | -0.7283 | mutated: NA6A |
7 | W | A | 0.0119 | |
8 | A | A | -0.7020 | mutated: NA8A |
9 | K | A | -1.5862 | |
10 | L | A | -0.0080 | |
11 | L | A | 0.5148 | |
12 | K | A | -1.0595 | |
13 | A | A | -0.0119 | mutated: NA13A |
14 | W | A | 0.9936 |