Project name: P01 [mutate: WF3A] [mutate: FW3A, IQ2A, IQ4A, IQ6A, IQ8A, IQ13A] [mutate: QI2A, QI4A, QI6A, QI8A, QI13A] [mutate: WF3A, WF7A, WF14A] [mutate: FY3A, FY7A, FY14A] [mutate: YW3A, YW7A, YW14A, IN2A, IN4A, IN6A, IN8A, IN13A] [mutate: NA2A, NA4A, NA6A, NA8A, NA13A]

Status: done

Started: 2025-10-06 14:23:53
Settings
Chain sequence(s) A: KNWNKNWNKLLKNW
input PDB
Selected Chain(s) A
Distance of aggregation 10 Å
FoldX usage Yes
Dynamic mode No
Automated mutations No
Mutated residues NA8A,NA2A,NA4A,NA13A,NA6A
Energy difference between WT (input) and mutated protein (by FoldX) 0.471438 kcal/mol
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Simulation log
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:00)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:00)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with A chain(s) selected             (00:00:00)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:00)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:00:00)
[INFO]       FoldX:    Building mutant model                                                       (00:00:09)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:01:04)
[INFO]       Analysis: Starting Aggrescan3D on folded.pdb                                          (00:01:18)
[INFO]       Main:     Simulation completed successfully.                                          (00:01:18)
Show buried residues

Minimal score value
-1.7406
Maximal score value
0.9936
Average score
-0.5152
Total score value
-7.2133

The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan3D score mutation
residue index residue name chain Aggrescan3D score
mutation
1 K A -1.6572
2 A A -0.6640 mutated: NA2A
3 W A 0.1439
4 A A -0.7198 mutated: NA4A
5 K A -1.7406
6 A A -0.7283 mutated: NA6A
7 W A 0.0119
8 A A -0.7020 mutated: NA8A
9 K A -1.5862
10 L A -0.0080
11 L A 0.5148
12 K A -1.0595
13 A A -0.0119 mutated: NA13A
14 W A 0.9936
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Laboratory of Theory of Biopolymers 2018