Project name: Lad-EAAAKEAAAK-SnapTag

Status: done

Started: 2025-06-30 20:49:30
Settings
Chain sequence(s) A: QVQLVQSGAEVKKPGASVKVSCKASGLTIEDYYMHWVRQAPGQGLEWMGWIDPENGDTEYGPKFQGRVTMTRDTSINTAYMELSRLRSDDTAVYYCAVHNAHYGTWFAYWGQGTLVTVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKKVEPKSCSEAAAKEAAAKDKDCEMKRTTLDSPLGKLELSGCEQGLHEIIFLGKGTSAADAVEVPAPAAVLGGPEPLMQATAWLNAYFHQPEAIEEFPVPALHHPVFQQESFTRQVLWKLLKVVKFGEVISYSHLAALAGNPAATAAVKTALSGNPVPILIPCHRVVQGDLDVGGYEGGLAVKEWLLAHEGHRLGKPGLG
B: DVVMTQSPLSLPVTLGQPASISCRSSQSLLHSSGNTYLEWYQQRPGQSPRPLIYKISTRFSGVPDRFSGSGSGTDFTLKISRVEAEDVGVYYCFQGSHVPYTFGGGTKVEIKRTVAAPSVFIFPPSDEQLKSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLSSPVTKSFNRGEC
input PDB
Selected Chain(s) A,B
Distance of aggregation 10 Å
FoldX usage Yes
Dynamic mode No
Automated mutations No
Downloads Download all the data
Simulation log
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:01)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:01)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with all chain(s) selected           (00:00:01)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:01)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:00:01)
[INFO]       Analysis: Starting Aggrescan3D on folded.pdb                                          (00:13:27)
[INFO]       Main:     Simulation completed successfully.                                          (00:13:35)
Show buried residues

Minimal score value
-3.7085
Maximal score value
2.391
Average score
-0.7033
Total score value
-445.8965

The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan3D score mutation
residue index residue name chain Aggrescan3D score
mutation
1 Q A -1.3674
2 V A -0.6686
3 Q A -1.2650
4 L A 0.0000
5 V A -0.0402
6 Q A 0.0000
7 S A -0.5824
8 G A -0.5760
9 A A -0.1693
10 E A -0.4986
11 V A 0.0083
12 K A -1.3406
13 K A -2.5191
14 P A -2.5187
15 G A -2.3152
16 A A -1.7648
17 S A -1.8247
18 V A 0.0000
19 K A -2.0971
20 V A 0.0000
21 S A -0.6513
22 C A 0.0000
23 K A -0.6178
24 A A 0.0000
25 S A -0.6873
26 G A -0.8894
27 L A -0.7480
28 T A -0.8732
29 I A 0.0000
30 E A -2.5817
31 D A -2.4763
32 Y A -1.1260
33 Y A -0.4242
34 M A 0.0000
35 H A 0.0000
36 W A 0.0000
37 V A 0.0000
38 R A 0.0000
39 Q A -0.5542
40 A A -0.9560
41 P A -0.9699
42 G A -1.2103
43 Q A -1.7267
44 G A -1.0758
45 L A 0.0000
46 E A -0.6474
47 W A 0.0000
48 M A 0.0000
49 G A 0.0000
50 W A -0.2255
51 I A 0.0000
52 D A 0.0000
53 P A 0.0000
54 E A -3.4763
55 N A -2.9883
56 G A -2.4540
57 D A -2.6455
58 T A -1.2707
59 E A -0.8669
60 Y A -0.6728
61 G A 0.0000
62 P A -1.6231
63 K A -2.2370
64 F A 0.0000
65 Q A -2.1012
66 G A -1.6176
67 R A -1.6497
68 V A 0.0000
69 T A -0.8314
70 M A 0.0000
71 T A -0.9871
72 R A -1.4096
73 D A -0.8613
74 T A -0.8410
75 S A 0.0394
76 I A 0.6546
77 N A -0.3029
78 T A 0.0000
79 A A 0.0000
80 Y A -0.7973
81 M A 0.0000
82 E A -1.5196
83 L A 0.0000
84 S A -1.8910
85 R A -2.8558
86 L A 0.0000
87 R A -3.4614
88 S A -2.3730
89 D A -2.5379
90 D A 0.0000
91 T A -0.8479
92 A A 0.0000
93 V A 0.3313
94 Y A 0.0000
95 Y A 0.0000
96 C A 0.0000
97 A A 0.0000
98 V A 0.0000
99 H A 0.0000
100 N A 0.0000
101 A A -0.1436
102 H A -0.5304
103 Y A 0.7970
104 G A 0.1981
105 T A 0.0000
106 W A 0.0000
107 F A 0.0000
108 A A 0.2325
109 Y A 0.2342
110 W A -0.0712
111 G A 0.0000
112 Q A -1.2937
113 G A -0.4868
114 T A 0.0000
115 L A 0.2706
116 V A 0.0000
117 T A 0.0000
118 V A 0.0000
119 S A -1.2891
120 S A -0.8958
121 A A -0.5793
122 S A -0.6408
123 T A -0.5681
124 K A -1.1786
125 G A -1.3359
126 P A 0.0000
127 S A -0.3449
128 V A 0.0000
129 F A 0.0000
130 P A -1.1577
131 L A 0.0000
132 A A -1.1128
133 P A 0.0000
134 S A -0.8315
135 S A -0.6489
136 K A -0.9264
137 S A 0.0000
138 T A -0.6275
139 S A -0.6635
140 G A -0.7949
141 G A -0.8658
142 T A -0.6026
143 A A 0.0000
144 A A 0.0000
145 L A 0.0000
146 G A 0.0000
147 C A 0.0000
148 L A 0.0000
149 V A 0.0000
150 K A 0.0000
151 D A -0.3612
152 Y A 0.0000
153 F A 0.0000
154 P A 0.0000
155 E A -0.4020
156 P A -0.7433
157 V A -0.6261
158 T A -0.5044
159 V A -0.1308
160 S A -0.3574
161 W A 0.0000
162 N A -0.7388
163 S A -0.6566
164 G A -0.4888
165 A A -0.2247
166 L A 0.0247
167 T A -0.1564
168 S A -0.1661
169 G A -0.1789
170 V A 0.1876
171 H A -0.2984
172 T A 0.0307
173 F A 0.0000
174 P A -0.3162
175 A A 0.2299
176 V A 0.5615
177 L A 1.2908
178 Q A 0.3597
179 S A -0.0155
180 S A -0.1557
181 G A 0.0780
182 L A 0.1556
183 Y A 0.4421
184 S A 0.0000
185 L A 0.0000
186 S A 0.0000
187 S A 0.0000
188 V A 0.0000
189 V A 0.0000
190 T A -0.1239
191 V A 0.0000
192 P A -0.6004
193 S A -0.5672
194 S A -0.5698
195 S A -0.5396
196 L A -0.7420
197 G A -0.9206
198 T A -0.6480
199 Q A -1.0833
200 T A -1.0452
201 Y A 0.0000
202 I A -1.2326
203 C A 0.0000
204 N A -1.4256
205 V A 0.0000
206 N A -1.7834
207 H A 0.0000
208 K A -2.7076
209 P A -1.6446
210 S A -1.8098
211 N A -2.5555
212 T A -2.0150
213 K A -2.6392
214 V A -1.5521
215 D A -2.4800
216 K A -2.1038
217 K A -2.4423
218 V A 0.0000
219 E A -2.7170
220 P A -1.6510
221 K A -1.7550
222 S A -0.9902
223 C A -0.5282
224 S A -1.0320
225 E A -1.9603
226 A A -1.6358
227 A A -1.2817
228 A A 0.0000
229 K A -3.3694
230 E A -3.1143
231 A A -2.5732
232 A A -2.4391
233 A A -2.5996
234 K A -3.5545
235 D A -3.6612
236 K A -3.7085
237 D A -3.6808
238 C A -3.2307
239 E A -3.2811
240 M A -2.1068
241 K A -2.8062
242 R A -2.7523
243 T A -1.2945
244 T A -0.6829
245 L A 0.0000
246 D A -1.2373
247 S A 0.0000
248 P A -0.6281
249 L A 0.0000
250 G A -1.0836
251 K A -1.1562
252 L A 0.0000
253 E A -0.3972
254 L A 0.0000
255 S A 0.0000
256 G A 0.0000
257 C A 0.0000
258 E A -2.6497
259 Q A -1.7025
260 G A 0.0000
261 L A 0.0000
262 H A -0.7108
263 E A -0.6537
264 I A 0.0000
265 I A 0.9551
266 F A 0.4976
267 L A 0.5738
268 G A -0.7196
269 K A -1.8827
270 G A -1.2777
271 T A -1.1356
272 S A -0.9909
273 A A -0.7727
274 A A -0.7510
275 D A -1.4549
276 A A -0.4537
277 V A 0.3430
278 E A -1.2037
279 V A -0.3431
280 P A -0.5469
281 A A -0.6463
282 P A -0.0140
283 A A 0.6443
284 A A 1.2821
285 V A 2.3910
286 L A 2.1518
287 G A 0.5242
288 G A -0.4441
289 P A -1.1043
290 E A -1.8093
291 P A 0.0000
292 L A 0.0000
293 M A 0.0692
294 Q A -0.2988
295 A A 0.0000
296 T A 0.0705
297 A A 0.3186
298 W A 0.0000
299 L A 0.0000
300 N A -0.6129
301 A A 0.0000
302 Y A 0.0000
303 F A 0.0000
304 H A -1.4080
305 Q A -1.8507
306 P A -1.7659
307 E A -2.6955
308 A A -2.2379
309 I A 0.0000
310 E A -2.7634
311 E A -2.5439
312 F A -0.7509
313 P A -0.2459
314 V A 0.7049
315 P A 0.0000
316 A A -0.0998
317 L A 0.1634
318 H A 0.0000
319 H A -0.5881
320 P A -0.8978
321 V A -0.5277
322 F A 0.0000
323 Q A -1.6941
324 Q A -2.1764
325 E A -2.0087
326 S A -0.8194
327 F A -0.2774
328 T A -0.5055
329 R A -0.6934
330 Q A -0.5607
331 V A 0.0000
332 L A 0.0000
333 W A -0.2412
334 K A -0.7088
335 L A 0.0000
336 L A -0.4974
337 K A -1.4464
338 V A -0.2731
339 V A 0.0000
340 K A -1.3224
341 F A -0.7726
342 G A -1.0483
343 E A -1.1993
344 V A -0.4567
345 I A 0.0000
346 S A -1.0708
347 Y A 0.0000
348 S A -1.1028
349 H A -1.2415
350 L A 0.0000
351 A A 0.0000
352 A A -0.8641
353 L A -0.3874
354 A A 0.0000
355 G A -1.0897
356 N A -1.5705
357 P A -1.1044
358 A A -0.6327
359 A A -0.6129
360 T A -0.8118
361 A A -0.3698
362 A A -0.4100
363 V A 0.0000
364 K A -1.3112
365 T A -0.7635
366 A A 0.0000
367 L A -0.8696
368 S A -1.2996
369 G A -0.9591
370 N A -0.6957
371 P A -0.2808
372 V A 0.0000
373 P A -0.2809
374 I A 0.0000
375 L A 0.0000
376 I A 0.0000
377 P A 0.0000
378 C A 0.0000
379 H A 0.0000
380 R A 0.0000
381 V A 0.0000
382 V A 0.0000
383 Q A -1.7838
384 G A -1.3858
385 D A -1.7423
386 L A -0.2080
387 D A -1.2247
388 V A -0.6163
389 G A -0.7474
390 G A -1.1674
391 Y A -1.0647
392 E A -2.0799
393 G A -1.3090
394 G A -0.8991
395 L A 0.1655
396 A A -0.2454
397 V A -0.3339
398 K A 0.0000
399 E A -1.0585
400 W A -0.7580
401 L A 0.0000
402 L A 0.0000
403 A A -1.4597
404 H A -0.7424
405 E A 0.0000
406 G A -1.3486
407 H A -1.6417
408 R A -2.3190
409 L A -1.3685
410 G A 0.0000
411 K A -2.4297
412 P A -1.4234
413 G A -1.0519
414 L A 0.0000
415 G A -0.7763
1 D B -1.2783
2 V B 0.0000
3 V B 0.7376
4 M B 0.0000
5 T B -0.4045
6 Q B 0.0000
7 S B -0.1737
8 P B 0.3909
9 L B 1.2049
10 S B 0.3734
11 L B 0.1056
12 P B -0.4734
13 V B 0.0000
14 T B -0.7837
15 L B -0.2808
16 G B -1.2601
17 Q B -1.8993
18 P B -1.9339
19 A B 0.0000
20 S B -0.8308
21 I B 0.0000
22 S B -0.9386
23 C B 0.0000
24 R B -2.2924
25 S B 0.0000
26 S B -0.8586
27 Q B -1.1422
28 S B -0.6413
29 L B 0.0000
30 L B 0.8150
31 H B -0.1309
32 S B -0.3810
33 S B -0.5455
34 G B -0.5723
35 N B -0.5477
36 T B 0.0000
37 Y B 0.0427
38 L B 0.0000
39 E B 0.0000
40 W B 0.0000
41 Y B 0.0000
42 Q B 0.0000
43 Q B 0.0000
44 R B -1.4297
45 P B -1.3182
46 G B -1.5289
47 Q B -1.8318
48 S B -1.1667
49 P B 0.0000
50 R B -0.7561
51 P B 0.0000
52 L B 0.0000
53 I B 0.0000
54 Y B -0.1540
55 K B -0.4856
56 I B -0.4270
57 S B -0.6543
58 T B -0.7707
59 R B -1.6155
60 F B 0.0000
61 S B -0.7224
62 G B -0.9930
63 V B 0.0000
64 P B -1.3607
65 D B -2.4201
66 R B -2.1094
67 F B 0.0000
68 S B -1.4276
69 G B -0.9121
70 S B -0.8943
71 G B -1.0456
72 S B -0.6793
73 G B -0.6012
74 T B -1.3909
75 D B -2.1437
76 F B 0.0000
77 T B -1.1365
78 L B 0.0000
79 K B -1.9580
80 I B 0.0000
81 S B -2.3703
82 R B -3.0007
83 V B 0.0000
84 E B -2.1055
85 A B -1.3663
86 E B -2.2395
87 D B 0.0000
88 V B -0.9240
89 G B 0.0000
90 V B 0.1637
91 Y B 0.0000
92 Y B 0.0000
93 C B 0.0000
94 F B 0.0000
95 Q B 0.0000
96 G B 0.0000
97 S B 0.0000
98 H B 0.0277
99 V B 0.6175
100 P B -0.1378
101 Y B 0.3199
102 T B 0.0937
103 F B 0.0000
104 G B 0.0000
105 G B -0.3196
106 G B 0.0000
107 T B 0.0000
108 K B -0.0991
109 V B 0.0000
110 E B -0.5334
111 I B -0.5648
112 K B -1.0000
113 R B -0.7969
114 T B -0.0804
115 V B 0.4005
116 A B 0.0488
117 A B -0.0784
118 P B 0.0000
119 S B -0.1607
120 V B 0.0000
121 F B 0.0000
122 I B 0.0000
123 F B 0.0000
124 P B -0.5899
125 P B 0.0000
126 S B -1.6015
127 D B -2.7289
128 E B -2.5549
129 Q B 0.0000
130 L B -2.1177
131 K B -2.7111
132 S B -1.6714
133 G B -1.2003
134 T B -0.9698
135 A B 0.0000
136 S B 0.0000
137 V B 0.0000
138 V B 0.0000
139 C B 0.0000
140 L B 0.0000
141 L B 0.0000
142 N B 0.0000
143 N B -0.7084
144 F B 0.0000
145 Y B 0.0000
146 P B -1.3449
147 R B -2.2912
148 E B -2.8731
149 A B -2.1435
150 K B -2.3179
151 V B -0.9607
152 Q B -0.4376
153 W B 0.0000
154 K B -0.4770
155 V B 0.0000
156 D B -1.7820
157 N B -1.4614
158 A B -0.2540
159 L B 0.7228
160 Q B -0.2798
161 S B -0.6300
162 G B -1.2507
163 N B -1.5429
164 S B -1.3742
165 Q B -1.3405
166 E B -1.5752
167 S B -0.8783
168 V B -0.7261
169 T B -1.1297
170 E B -2.2359
171 Q B -1.8077
172 D B -1.9464
173 S B -1.9301
174 K B -2.2521
175 D B -1.7197
176 S B -1.6844
177 T B 0.0000
178 Y B 0.0000
179 S B 0.0000
180 L B 0.0000
181 S B 0.0000
182 S B 0.0000
183 T B -0.6732
184 L B 0.0000
185 T B -0.6279
186 L B -0.7889
187 S B -1.0159
188 K B -1.9476
189 A B -1.8171
190 D B -2.5761
191 Y B 0.0000
192 E B -3.1454
193 K B -3.4349
194 H B -2.6914
195 K B -2.5232
196 V B -1.1078
197 Y B 0.0000
198 A B -0.5270
199 C B 0.0000
200 E B -0.5003
201 V B 0.0000
202 T B -1.1632
203 H B 0.0000
204 Q B -1.6817
205 G B -0.4211
206 L B -0.2280
207 S B -0.4486
208 S B -0.4097
209 P B -0.4828
210 V B 0.1231
211 T B -0.3450
212 K B -0.7595
213 S B -0.5842
214 F B 0.0000
215 N B -1.3037
216 R B -1.8161
217 G B -1.5632
218 E B -1.4724
219 C B -0.8987
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Laboratory of Theory of Biopolymers 2018