Project name: 09_rank

Status: done

Started: 2026-04-28 14:23:17
Settings
Chain sequence(s) B: SPYKNWSPEEVKKYVEEVLETINTTSDSDNPYTKYMEFEFYYWWFQETDIPKEAKKEVMPELFRKRWELYQQVT
input PDB
Selected Chain(s) B
Distance of aggregation 10 Å
FoldX usage Yes
Dynamic mode No
Automated mutations No
Downloads Download all the data
Simulation log
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:00)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:00)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with B chain(s) selected             (00:00:00)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:00)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:00:00)
[INFO]       Analysis: Starting Aggrescan3D on folded.pdb                                          (00:02:38)
[INFO]       Main:     Simulation completed successfully.                                          (00:02:38)
Show buried residues

Minimal score value
-4.0337
Maximal score value
1.3222
Average score
-1.5832
Total score value
-117.1554

The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan3D score mutation
residue index residue name chain Aggrescan3D score
mutation
1 S B -1.0905
2 P B -1.0583
3 Y B -1.4228
4 K B -2.5008
5 N B -2.2504
6 W B -1.6675
7 S B -2.0951
8 P B -3.2160
9 E B -3.3175
10 E B -2.8759
11 V B 0.0000
12 K B -3.7981
13 K B -3.8469
14 Y B -2.4634
15 V B 0.0000
16 E B -3.7521
17 E B -3.5988
18 V B -2.0722
19 L B -2.3525
20 E B -3.2357
21 T B -2.0173
22 I B 0.0000
23 N B -2.2070
24 T B -1.5270
25 T B -1.3822
26 S B -2.2576
27 D B -2.8243
28 S B -2.3712
29 D B -2.9676
30 N B -2.3678
31 P B -1.0204
32 Y B -0.0766
33 T B -1.0278
34 K B -1.4350
35 Y B 0.0000
36 M B 0.3239
37 E B -1.0920
38 F B 0.0000
39 E B 0.4538
40 F B 1.3222
41 Y B 0.0000
42 Y B 0.5196
43 W B 0.9626
44 W B 0.1995
45 F B 0.0000
46 Q B -1.3375
47 E B -2.0128
48 T B -1.5171
49 D B -2.1258
50 I B 0.0000
51 P B -2.4367
52 K B -3.5373
53 E B -3.7024
54 A B 0.0000
55 K B -3.0902
56 K B -4.0337
57 E B -4.0072
58 V B 0.0000
59 M B -1.9501
60 P B -1.8533
61 E B -2.6075
62 L B 0.0000
63 F B -0.5994
64 R B -2.0927
65 K B -2.0508
66 R B -1.2712
67 W B -1.3396
68 E B -2.3974
69 L B -1.2521
70 Y B -0.7505
71 Q B -1.7868
72 Q B -1.5304
73 V B -0.2032
74 T B -0.2630
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Laboratory of Theory of Biopolymers 2018