Project name: af2_design4

Status: done

Started: 2025-07-26 20:32:59
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Chain sequence(s) A: QVQLVESGGGLVQPGGSLRLSCAASSPQWQKSKFLAGLWFRQAPGQGLEAVASYGENKETGLGSISRDPRFTISRDNSKNTLYLQMNSLRAEDTAVYYCALGPRLMEDKEQFQLATHWGQGTLVTVSS
input PDB
Selected Chain(s) A
Distance of aggregation 10 Å
FoldX usage Yes
Dynamic mode No
Automated mutations No
Downloads Download all the data
Simulation log
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:01)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:01)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with A chain(s) selected             (00:00:01)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:01)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:00:01)
[INFO]       Analysis: Starting Aggrescan3D on folded.pdb                                          (00:01:28)
[INFO]       Main:     Simulation completed successfully.                                          (00:01:29)
Show buried residues

Minimal score value
-3.7388
Maximal score value
1.6445
Average score
-0.7285
Total score value
-93.2527

The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan3D score mutation
residue index residue name chain Aggrescan3D score
mutation
1 Q A -1.3941
2 V A -1.0034
3 Q A -1.1256
4 L A 0.0000
5 V A 0.9526
6 E A 0.3140
7 S A -0.1572
8 G A -0.7266
9 G A 0.0740
10 G A 0.8279
11 L A 1.2951
12 V A 0.0000
13 Q A -1.4786
14 P A -1.8098
15 G A -1.5994
16 G A -1.1759
17 S A -1.6259
18 L A -1.1786
19 R A -2.3374
20 L A 0.0000
21 S A -0.5221
22 C A 0.0000
23 A A -0.1840
24 A A -0.6093
25 S A -0.7461
26 S A 0.0000
27 P A -1.6478
28 Q A -2.3012
29 W A 0.0000
30 Q A -3.4095
31 K A -3.1753
32 S A -2.4133
33 K A -2.5528
34 F A -0.4429
35 L A -0.7804
36 A A -0.0156
37 G A 0.0000
38 L A 0.6424
39 W A 0.0000
40 F A 0.3154
41 R A -0.1024
42 Q A -0.4669
43 A A -0.9208
44 P A -1.0169
45 G A -1.1947
46 Q A -1.6510
47 G A -0.8068
48 L A 0.4849
49 E A -0.4716
50 A A -0.2873
51 V A 0.0000
52 A A 0.0000
53 S A 0.2865
54 Y A 0.1387
55 G A 0.0000
56 E A -2.2361
57 N A 0.0000
58 K A -2.9415
59 E A -2.8481
60 T A -1.7113
61 G A -1.5724
62 L A -0.4346
63 G A -0.4417
64 S A 0.1784
65 I A 0.7544
66 S A -0.5901
67 R A -1.8976
68 D A -1.2966
69 P A -0.9929
70 R A -1.3244
71 F A 0.0000
72 T A -0.9098
73 I A 0.0000
74 S A -0.4660
75 R A -1.3922
76 D A -2.0580
77 N A -3.1534
78 S A -2.2880
79 K A -2.6352
80 N A -2.4469
81 T A 0.0000
82 L A 0.0000
83 Y A -0.7168
84 L A 0.0000
85 Q A -1.7606
86 M A 0.0000
87 N A -2.1888
88 S A -1.5620
89 L A 0.0000
90 R A -2.6389
91 A A -1.8620
92 E A -2.3073
93 D A 0.0000
94 T A -0.5128
95 A A 0.0000
96 V A 0.7502
97 Y A 0.0000
98 Y A 0.5091
99 C A 0.0000
100 A A 0.0000
101 L A 0.0000
102 G A 0.0000
103 P A 0.3233
104 R A 0.2297
105 L A 0.2831
106 M A -0.3370
107 E A -2.6760
108 D A -3.6566
109 K A -3.7388
110 E A -3.3293
111 Q A -1.8861
112 F A 0.7034
113 Q A 0.2494
114 L A 1.1559
115 A A 0.0000
116 T A 0.1034
117 H A -0.1764
118 W A 0.2595
119 G A -0.1536
120 Q A -0.8737
121 G A 0.0601
122 T A 0.5457
123 L A 1.6445
124 V A 0.0000
125 T A 0.2868
126 V A 0.0000
127 S A -0.7538
128 S A -0.5226
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Laboratory of Theory of Biopolymers 2018