| Chain sequence(s) |
A: GGKGHFG
C: GGKGHFG B: GGKGHFG D: GGKGHFG input PDB |
| Selected Chain(s) | A,C,B,D |
| Distance of aggregation | 10 Å |
| FoldX usage | Yes |
| Dynamic mode | No |
| Automated mutations | No |
| Downloads | Download all the data |
| Simulation log |
[INFO] Logger: Verbosity set to: 2 - [INFO] (00:00:03)
[WARNING] runJob: Working directory already exists (possibly overwriting previous results -ow
to prevent this behavior) (00:00:03)
[INFO] runJob: Starting aggrescan3d job on: input.pdb with all chain(s) selected (00:00:03)
[INFO] runJob: Creating pdb object from: input.pdb (00:00:03)
[INFO] FoldX: Starting FoldX energy minimalization (00:00:03)
[INFO] Analysis: Starting Aggrescan3D on folded.pdb (00:00:57)
[INFO] Main: Simulation completed successfully. (00:00:59)
|
The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.
| residue index | residue name | chain | Aggrescan3D score | mutation |
|---|---|---|---|---|
| residue index | residue name | chain | Aggrescan3D score | |
| 1 | G | A | -1.6125 | |
| 2 | G | A | -2.0026 | |
| 3 | K | A | -3.2010 | |
| 4 | G | A | 0.0000 | |
| 5 | H | A | -2.2800 | |
| 6 | F | A | -1.5641 | |
| 7 | G | A | -1.3773 | |
| 1 | G | B | -1.4817 | |
| 2 | G | B | -2.3535 | |
| 3 | K | B | -3.1961 | |
| 4 | G | B | -2.4352 | |
| 5 | H | B | -2.0453 | |
| 6 | F | B | -1.0737 | |
| 7 | G | B | -1.0504 | |
| 1 | G | C | -1.3862 | |
| 2 | G | C | -2.0604 | |
| 3 | K | C | -3.1224 | |
| 4 | G | C | -2.6540 | |
| 5 | H | C | -2.4002 | |
| 6 | F | C | -1.6412 | |
| 7 | G | C | -1.4818 | |
| 1 | G | D | -1.4352 | |
| 2 | G | D | -1.9298 | |
| 3 | K | D | -3.0363 | |
| 4 | G | D | -2.2155 | |
| 5 | H | D | -1.9534 | |
| 6 | F | D | -1.1158 | |
| 7 | G | D | -1.0762 |