Project name: bade4d8f8a2877b

Status: done

Started: 2026-02-11 11:05:55
Settings
Chain sequence(s) A: GGKGHFG
C: GGKGHFG
B: GGKGHFG
D: GGKGHFG
input PDB
Selected Chain(s) A,C,B,D
Distance of aggregation 10 Å
FoldX usage Yes
Dynamic mode No
Automated mutations No
Downloads Download all the data
Simulation log
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:03)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:03)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with all chain(s) selected           (00:00:03)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:03)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:00:03)
[INFO]       Analysis: Starting Aggrescan3D on folded.pdb                                          (00:00:57)
[INFO]       Main:     Simulation completed successfully.                                          (00:00:59)
Show buried residues

Minimal score value
-3.201
Maximal score value
0.0
Average score
-1.8993
Total score value
-53.1818

The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan3D score mutation
residue index residue name chain Aggrescan3D score
mutation
1 G A -1.6125
2 G A -2.0026
3 K A -3.2010
4 G A 0.0000
5 H A -2.2800
6 F A -1.5641
7 G A -1.3773
1 G B -1.4817
2 G B -2.3535
3 K B -3.1961
4 G B -2.4352
5 H B -2.0453
6 F B -1.0737
7 G B -1.0504
1 G C -1.3862
2 G C -2.0604
3 K C -3.1224
4 G C -2.6540
5 H C -2.4002
6 F C -1.6412
7 G C -1.4818
1 G D -1.4352
2 G D -1.9298
3 K D -3.0363
4 G D -2.2155
5 H D -1.9534
6 F D -1.1158
7 G D -1.0762
Download PDB file
View in 3Dmol
Play the video

Laboratory of Theory of Biopolymers 2018