| Chain sequence(s) |
D: PTGNNAEICLLPLDYGPCRALLLRYYYDRYTQSCRQFLYGGCEGNANNFYTWEACDDACWRIE
input PDB |
| Selected Chain(s) | D |
| Distance of aggregation | 10 Å |
| FoldX usage | Yes |
| Dynamic mode | No |
| Automated mutations | No |
| Downloads | Download all the data |
| Simulation log |
[INFO] Logger: Verbosity set to: 2 - [INFO] (00:00:00)
[WARNING] runJob: Working directory already exists (possibly overwriting previous results -ow
to prevent this behavior) (00:00:00)
[INFO] runJob: Starting aggrescan3d job on: input.pdb with D chain(s) selected (00:00:00)
[INFO] runJob: Creating pdb object from: input.pdb (00:00:00)
[INFO] FoldX: Starting FoldX energy minimalization (00:00:00)
[INFO] Analysis: Starting Aggrescan3D on folded.pdb (00:00:21)
[INFO] Main: Simulation completed successfully. (00:00:21)
|
The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.
| residue index | residue name | chain | Aggrescan3D score | mutation |
|---|---|---|---|---|
| residue index | residue name | chain | Aggrescan3D score | |
| 1A | P | D | -0.8810 | |
| 1B | T | D | -0.7920 | |
| 1C | G | D | -0.9960 | |
| 1D | N | D | -1.6480 | |
| 1 | N | D | -1.3247 | |
| 2 | A | D | -1.4073 | |
| 3 | E | D | -1.7356 | |
| 4 | I | D | -0.2830 | |
| 5 | C | D | 0.0000 | |
| 6 | L | D | 0.0888 | |
| 7 | L | D | 0.1791 | |
| 8 | P | D | 0.1705 | |
| 9 | L | D | 0.6020 | |
| 10 | D | D | -0.3196 | |
| 11 | Y | D | 0.6923 | |
| 12 | G | D | -0.7654 | |
| 13 | P | D | -0.8735 | |
| 14 | C | D | -0.6800 | |
| 15 | R | D | -1.1911 | |
| 16 | A | D | 0.4617 | |
| 17 | L | D | 2.1648 | |
| 18 | L | D | 2.1212 | |
| 19 | L | D | 1.7843 | |
| 20 | R | D | 0.9721 | |
| 21 | Y | D | -0.2930 | |
| 22 | Y | D | 0.0000 | |
| 23 | Y | D | 0.0000 | |
| 24 | D | D | 0.0000 | |
| 25 | R | D | -1.0652 | |
| 26 | Y | D | 0.2591 | |
| 27 | T | D | -0.6993 | |
| 28 | Q | D | -1.3845 | |
| 29 | S | D | -1.3366 | |
| 30 | C | D | 0.0000 | |
| 31 | R | D | -2.3637 | |
| 32 | Q | D | -1.3180 | |
| 33 | F | D | 0.0000 | |
| 34 | L | D | 1.8175 | |
| 35 | Y | D | 0.0000 | |
| 36 | G | D | 0.0000 | |
| 37 | G | D | -0.0704 | |
| 38 | C | D | -1.1196 | |
| 39 | E | D | -1.9502 | |
| 40 | G | D | -1.1777 | |
| 41 | N | D | -0.6611 | |
| 42 | A | D | -0.3809 | |
| 43 | N | D | 0.0000 | |
| 44 | N | D | 0.4163 | |
| 45 | F | D | 0.4964 | |
| 46 | Y | D | 1.3418 | |
| 47 | T | D | -0.0093 | |
| 48 | W | D | -1.0262 | |
| 49 | E | D | -2.1818 | |
| 50 | A | D | -1.1746 | |
| 51 | C | D | 0.0000 | |
| 52 | D | D | -2.5447 | |
| 53 | D | D | -2.6171 | |
| 54 | A | D | -1.2948 | |
| 55 | C | D | 0.0000 | |
| 56 | W | D | -0.7431 | |
| 57 | R | D | -1.9158 | |
| 58 | I | D | -1.5041 | |
| 59 | E | D | -2.3310 |