Project name: 6XY2

Status: done

Started: 2026-03-23 06:48:08
Settings
Chain sequence(s) A: MHVAQPAVVLASSRGIASFVCEYASPGKATEVRVTVLRQADSQVTEVCAATYMMGNELTFLDDSICTGTSSGNQVNLTIQGLRAMDTGLYICKVELMYPPPYYLGIGNGTQIYVIDP
H: VQLQESGPGLVKPSETLSLTCTVSGFSLTSYGLSWIRQPPGKGLEWIGYIWYDGNTNFHSPLKSRVTISVDTSKNQFSLKLSSVTAADTAVYYCAKTEGHYYGSNYGYYALDYWGQGTLVTVSSASTKGPSVFPLAPSSKSTGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKRVEPKS
L: DIQMTQSPSSLSASVGDRVTITCRASENIYSNLAWYQQKQGKAPKLLLYAATNLQDGVPSRFSGSGSGTDYTLTISSLQPEDFATYFCQHLWGTPYTFGQGTKLEIKRTVAAPSVFIFPPSDEQLKSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLSSPVTKSFNRG
input PDB
Selected Chain(s) A,H,L
Distance of aggregation 10 Å
FoldX usage Yes
Dynamic mode No
Automated mutations No
Downloads Download all the data
Simulation log
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:00)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:00)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with all chain(s) selected           (00:00:00)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:00)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:00:00)
[INFO]       Analysis: Starting Aggrescan3D on folded.pdb                                          (00:05:25)
[INFO]       Main:     Simulation completed successfully.                                          (00:05:29)
Show buried residues

Minimal score value
-3.9301
Maximal score value
2.3957
Average score
-0.6337
Total score value
-350.4115

The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan3D score mutation
residue index residue name chain Aggrescan3D score
mutation
3 M A 0.0000
4 H A -1.0682
5 V A 0.0000
6 A A -0.6429
7 Q A -0.3460
8 P A 0.1360
9 A A 0.3620
10 V A 1.7796
11 V A 1.6732
12 L A 2.3957
13 A A 0.6591
14 S A -0.1166
15 S A -0.8457
16 R A -2.1846
17 G A 0.0000
18 I A -0.7081
19 A A 0.0000
20 S A -0.0789
21 F A 0.0000
22 V A -0.1350
23 C A 0.0000
24 E A -1.2762
25 Y A 0.0000
26 A A -0.6663
27 S A -0.8757
28 P A -0.7196
29 G A -1.4369
30 K A -2.0085
31 A A -0.7759
32 T A -0.3159
33 E A -0.3279
34 V A 0.0000
35 R A -0.8610
36 V A 0.0000
37 T A -0.5889
38 V A 0.0000
39 L A -0.5364
40 R A -0.8655
41 Q A -1.0345
42 A A -1.2011
43 D A -2.1612
44 S A -1.4808
45 Q A -1.3399
46 V A -0.0756
47 T A -0.5867
48 E A -1.5049
49 V A -0.4702
50 C A 0.0000
51 A A -0.2447
52 A A 0.0000
53 T A -0.2772
54 Y A 0.0000
55 M A -0.2454
56 M A -0.9012
57 G A -1.0908
58 N A -1.8345
59 E A -2.2004
60 L A 0.0000
61 T A -0.2753
62 F A 0.2568
63 L A 0.5302
64 D A -1.6600
65 D A -1.8895
66 S A -0.5139
67 I A 0.3919
68 C A 0.0000
69 T A 0.0428
70 G A -0.6323
71 T A -1.0191
72 S A -1.3688
73 S A -1.3479
74 G A -1.3722
75 N A -1.5108
76 Q A -1.3044
77 V A 0.0000
78 N A -0.9038
79 L A 0.0000
80 T A -0.2793
81 I A 0.0000
82 Q A -1.4835
83 G A -1.4595
84 L A -0.9711
85 R A -1.3439
86 A A 0.3545
87 M A 0.5875
88 D A -0.2249
89 T A 0.3339
90 G A -0.3379
91 L A -0.1577
92 Y A 0.0000
93 I A 0.0000
94 C A 0.0000
95 K A -0.7415
96 V A 0.0000
97 E A 0.0000
98 L A 0.0000
99 M A 0.5365
100 Y A 0.6033
101 P A -0.1172
102 P A 0.1641
103 P A 0.1362
104 Y A 0.7285
105 Y A 0.0000
106 L A 0.1971
107 G A 0.0000
108 I A -0.3437
109 G A -0.9303
110 N A -1.4038
111 G A 0.0000
112 T A 0.0000
113 Q A 0.3447
114 I A 0.0000
115 Y A 1.8155
116 V A 1.1769
117 I A 1.5397
118 D A -0.2330
119 P A -0.4719
2 V H 1.1305
3 Q H -0.6353
4 L H 0.0000
5 Q H -1.5498
6 E H 0.0000
7 S H -0.6451
8 G H -0.3199
9 P H -0.4257
10 G H -0.3713
11 L H -0.1883
12 V H -0.8271
13 K H -1.7678
14 P H -1.3571
15 S H -1.3798
16 E H -1.9382
17 T H -1.3252
18 L H 0.0000
19 S H -0.6824
20 L H 0.0000
21 T H -0.6299
22 C H 0.0000
23 T H -1.2186
24 V H 0.0000
25 S H -0.6189
26 G H -0.0058
27 F H 0.3243
28 S H 0.6434
29 L H 1.5089
30 T H 0.6978
31 S H 0.2229
32 Y H 0.2377
33 G H 0.0000
34 L H 0.0000
35 S H 0.0000
36 W H 0.0000
37 I H 0.0000
38 R H 0.0000
39 Q H -0.8824
40 P H 0.0000
41 P H -1.0155
42 G H -1.6340
43 K H -2.4027
44 G H -1.7133
45 L H 0.0000
46 E H -1.2556
47 W H 0.0000
48 I H 0.0000
49 G H 0.0000
50 Y H 0.0000
51 I H 0.0000
52 W H 0.0000
53 Y H 0.4580
54 D H -1.3170
55 G H -1.0059
56 N H -1.1015
57 T H -1.0685
58 N H -1.6913
59 F H 0.0000
60 H H -1.8750
61 S H -1.4149
62 P H -1.1217
63 L H 0.0000
64 K H -1.7163
65 S H -1.1279
66 R H -1.1600
67 V H 0.0000
68 T H -0.7182
69 I H 0.0000
70 S H -0.4253
71 V H -0.5287
72 D H -1.8598
73 T H -1.3444
74 S H -1.6166
75 K H -2.5147
76 N H -2.0111
77 Q H -1.6041
78 F H 0.0000
79 S H -0.4929
80 L H 0.0000
81 K H -0.9951
82 L H 0.0000
83 S H -1.0412
84 S H -1.1517
85 V H 0.0000
86 T H -0.5254
87 A H -0.1398
88 A H 0.0622
89 D H 0.0000
90 T H 0.0816
91 A H 0.0000
92 V H 0.1374
93 Y H 0.0000
94 Y H 0.0000
95 C H 0.0000
96 A H 0.0000
97 K H 0.0904
98 T H 0.0000
99 E H -0.3456
100 G H 0.0000
101 H H 0.5947
102 Y H 1.4614
103 Y H 0.9184
104 G H 0.0925
105 S H -0.0852
106 N H 0.1282
107 Y H 0.8227
108 G H 0.0000
109 Y H 0.0000
110 Y H 0.0000
111 A H 0.0000
112 L H 0.0000
113 D H -0.0683
114 Y H 0.3971
115 W H -0.5518
116 G H 0.0000
117 Q H -2.0062
118 G H -1.1269
119 T H -0.3654
120 L H 0.0707
121 V H 0.0000
122 T H -0.1080
123 V H 0.0000
124 S H -0.5856
125 S H -0.7195
126 A H -0.5488
127 S H -0.7470
128 T H -1.0257
129 K H -1.7560
130 G H -1.7746
131 P H -0.8258
132 S H -0.4410
133 V H 0.0000
134 F H 0.0000
135 P H -1.2104
136 L H 0.0000
137 A H -1.2037
138 P H 0.0000
139 S H -1.0365
140 S H -1.4133
141 K H -2.0530
142 S H -1.3184
143 T H -0.8700
146 G H -0.8038
147 T H -0.7375
148 A H 0.0000
149 A H 0.0000
150 L H 0.0000
151 G H 0.0000
152 C H 0.0000
153 L H 0.0000
154 V H 0.0000
155 K H 0.0000
156 D H -0.5597
157 Y H 0.0000
158 F H 0.0000
159 P H 0.0000
160 E H -0.2682
161 P H -0.5390
162 V H -0.5742
163 T H -0.4790
164 V H -0.3701
165 S H -0.4211
166 W H 0.0000
167 N H -0.8313
168 S H -0.7172
169 G H -0.5119
170 A H -0.2268
171 L H -0.0018
172 T H -0.2053
173 S H -0.2515
174 G H -0.2834
175 V H 0.1009
176 H H -0.1254
177 T H 0.0529
178 F H 0.0000
179 P H -0.3940
180 A H 0.3246
181 V H 0.5208
182 L H 1.3497
183 Q H 0.2498
184 S H -0.0488
185 S H -0.2027
186 G H 0.1050
187 L H 0.0502
188 Y H 0.4687
189 S H 0.0000
190 L H 0.3817
191 S H 0.0000
192 S H 0.0000
193 V H 0.0000
194 V H 0.0000
195 T H -0.1737
196 V H 0.0000
197 P H -0.4491
198 S H -0.6632
199 S H -0.4809
200 S H -0.5346
201 L H -0.7919
202 G H -1.0655
203 T H -0.6965
204 Q H -1.2557
205 T H -1.1520
206 Y H 0.0000
207 I H -1.3600
208 C H 0.0000
209 N H -1.4884
210 V H 0.0000
211 N H -1.7624
212 H H 0.0000
213 K H -2.7256
214 P H -1.6651
215 S H -1.9448
216 N H -2.6252
217 T H -2.0801
218 K H -2.6102
219 V H -1.5605
220 D H -2.5430
221 K H -2.2219
222 R H -2.6965
223 V H 0.0000
224 E H -2.8919
225 P H -2.0087
226 K H -2.5403
227 S H -1.3735
1 D L -2.4080
2 I L -1.8097
3 Q L -2.2848
4 M L 0.0000
5 T L -1.3209
6 Q L 0.0000
7 S L -0.9086
8 P L -0.6277
9 S L -0.8256
10 S L -0.6754
11 L L -0.4613
12 S L -0.7080
13 A L -1.0370
14 S L -1.1759
15 V L -0.9298
16 G L -1.2573
17 D L -2.0454
18 R L -2.5108
19 V L 0.0000
20 T L -0.5348
21 I L 0.0000
22 T L -0.7787
23 C L 0.0000
24 R L -2.7554
25 A L 0.0000
26 S L -2.2158
27 E L -2.6919
28 N L -1.5934
29 I L 0.0000
30 Y L -0.1626
31 S L -0.1914
32 N L 0.0000
33 L L 0.0000
34 A L 0.0000
35 W L 0.0000
36 Y L 0.0000
37 Q L 0.0000
38 Q L 0.0000
39 K L -3.2921
40 Q L -2.9347
41 G L -2.4315
42 K L -3.2460
43 A L -2.0595
44 P L 0.0000
45 K L -2.0145
46 L L 0.0000
47 L L 0.0000
48 L L 0.0000
49 Y L 0.1151
50 A L 0.0000
51 A L 0.0000
52 T L -0.2702
53 N L -0.3444
54 L L -0.2851
55 Q L -1.2522
56 D L -2.0403
57 G L -1.2898
58 V L -0.8900
59 P L -0.6291
60 S L -0.6807
61 R L -0.9453
62 F L 0.0000
63 S L -0.3138
64 G L -0.2578
65 S L -0.5931
66 G L -0.9213
67 S L -0.7980
68 G L -0.9930
69 T L -1.6810
70 D L -1.7845
71 Y L 0.0000
72 T L -0.6669
73 L L 0.0000
74 T L -0.6787
75 I L 0.0000
76 S L -1.5645
77 S L -1.4430
78 L L 0.0000
79 Q L -1.4721
80 P L -2.0234
81 E L -2.6238
82 D L 0.0000
83 F L -1.6818
84 A L 0.0000
85 T L -1.1960
86 Y L 0.0000
87 F L 0.0000
88 C L 0.0000
89 Q L 0.0000
90 H L 0.0000
91 L L 0.0000
92 W L 0.0000
93 G L -0.7578
94 T L -1.0720
95 P L 0.0000
96 Y L 0.0000
97 T L -0.8821
98 F L 0.0000
99 G L 0.0000
100 Q L -1.9369
101 G L -1.2423
102 T L 0.0000
103 K L -1.4145
104 L L 0.0000
105 E L -1.1179
106 I L 0.0000
107 K L -1.4430
108 R L -1.2066
109 T L 0.1387
110 V L 1.1880
111 A L 0.4714
112 A L 0.0531
113 P L 0.0000
114 S L -0.2110
115 V L 0.0000
116 F L 0.1375
117 I L 0.1071
118 F L 0.0000
119 P L -0.5478
120 P L 0.0000
121 S L -1.8729
122 D L -3.1675
123 E L -3.0520
124 Q L 0.0000
125 L L -2.3878
126 K L -2.8096
127 S L -1.7313
128 G L -1.2554
129 T L -1.0860
130 A L 0.0000
131 S L 0.0000
132 V L 0.0000
133 V L 0.0000
134 C L 0.0000
135 L L 0.0000
136 L L 0.0000
137 N L 0.0000
138 N L -0.9462
139 F L 0.0000
140 Y L -1.0255
141 P L -1.6798
142 R L -3.1640
143 E L -3.2529
144 A L -2.4115
145 K L -2.5061
146 V L -1.2457
147 Q L -0.8275
148 W L 0.0000
149 K L -0.7628
150 V L 0.0000
151 D L -1.4905
152 N L -1.4812
153 A L -0.4699
154 L L -0.0718
155 Q L -0.6162
156 S L -0.6972
157 G L -1.1361
158 N L -1.3677
159 S L -1.6379
160 Q L -2.0049
161 E L -2.1849
162 S L -1.0413
163 V L -0.6787
164 T L -0.8784
165 E L -1.9976
166 Q L 0.0000
167 D L -1.9752
168 S L -2.3732
169 K L -2.7866
170 D L -2.2207
171 S L 0.0000
172 T L 0.0000
173 Y L 0.0000
174 S L 0.0000
175 L L 0.0000
176 S L 0.0000
177 S L 0.0000
178 T L -0.8718
179 L L 0.0000
180 T L -0.6410
181 L L -0.9484
182 S L -1.5779
183 K L -2.3789
184 A L -2.2593
185 D L -3.1900
186 Y L 0.0000
187 E L -3.9301
188 K L -3.8402
189 H L -3.2000
190 K L -3.1322
191 V L -1.3454
192 Y L 0.0000
193 A L -0.7640
194 C L 0.0000
195 E L -1.1565
196 V L 0.0000
197 T L -1.1831
198 H L 0.0000
199 Q L -1.6885
200 G L -0.2363
201 L L -0.1661
202 S L -0.4756
203 S L -0.4281
204 P L -0.6296
205 V L -0.1622
206 T L -0.5814
207 K L -0.7787
208 S L -0.7114
209 F L -0.9337
210 N L -2.0300
211 R L -2.1657
212 G L -1.5261
Download PDB file
View in 3Dmol
Play the video

Laboratory of Theory of Biopolymers 2018