Project name: hCA_d 1g96

Status: done

Started: 2025-03-04 12:27:37
Settings
Chain sequence(s) A: VGGPMDASVEEEGVRRALDFAVGEYNKASNDMYHSRALQVVRARKQIVAGVNYFLDVELGRTTCTKTQPNLDNCPFHDQPHLKRKAFCSFQIYAVPWQGTMTLSKSTCQDA
input PDB
Selected Chain(s) A
Distance of aggregation 10 Å
FoldX usage Yes
Dynamic mode No
Automated mutations No
Downloads Download all the data
Simulation log
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:00)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:00)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with A chain(s) selected             (00:00:00)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:00)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:00:00)
[INFO]       Analysis: Starting Aggrescan3D on folded.pdb                                          (00:01:07)
[INFO]       Main:     Simulation completed successfully.                                          (00:01:08)
Show buried residues

Minimal score value
-4.2245
Maximal score value
2.0968
Average score
-0.9259
Total score value
-102.7779

The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan3D score mutation
residue index residue name chain Aggrescan3D score
mutation
10 V A 1.4906
11 G A 0.1542
12 G A -0.2534
13 P A -0.7641
14 M A -0.7269
15 D A -2.5262
16 A A -2.0356
17 S A -2.0604
18 V A -1.8647
19 E A -3.0721
20 E A -3.0393
21 E A -3.8058
22 G A -2.9389
23 V A 0.0000
24 R A -3.9811
25 R A -3.3794
26 A A -1.2881
27 L A -1.3596
28 D A -1.9598
29 F A 0.2626
30 A A 0.0131
31 V A -0.6799
32 G A -0.9123
33 E A -1.2237
34 Y A -0.4122
35 N A -1.4436
36 K A -2.4555
37 A A -1.3974
38 S A -1.5813
39 N A -1.9293
40 D A -1.9699
41 M A 0.1921
42 Y A 0.4608
43 H A -1.0811
44 S A -1.0124
45 R A -1.9151
46 A A -0.5697
47 L A 0.7685
48 Q A -0.1926
49 V A 0.6107
50 V A 0.9563
51 R A -1.5496
52 A A -1.8495
53 R A -2.8506
54 K A -1.7812
55 Q A -0.5434
56 I A 2.0342
57 V A 1.8842
58 A A 1.2229
59 G A 0.5596
60 V A 0.9770
61 N A 0.9186
62 Y A 1.8231
63 F A 2.0968
64 L A 1.0284
65 D A -0.6528
66 V A -0.2438
67 E A -1.6484
68 L A -0.9338
69 G A -1.9308
70 R A -2.2349
71 T A -1.1337
72 T A -0.5257
73 C A -0.9310
74 T A -1.1610
75 K A -2.0236
76 T A -1.2071
77 Q A -1.4681
78 P A -1.7103
79 N A -2.3958
80 L A -1.9565
81 D A -2.6507
82 N A -2.1607
83 C A 0.0000
84 P A -0.3697
85 F A -0.0260
86 H A -2.0004
87 D A -3.1054
88 Q A -2.8515
89 P A -2.2837
90 H A -2.3164
91 L A -2.2104
92 K A -3.9660
93 R A -4.2245
94 K A -3.2833
95 A A -2.0010
96 F A -0.7579
97 C A 0.0000
98 S A -0.2884
99 F A 0.7077
100 Q A 0.7929
101 I A 1.6098
102 Y A 1.2632
103 A A 0.0000
104 V A 0.0000
105 P A 0.0805
106 W A 0.3046
107 Q A -0.8347
108 G A -0.5602
109 T A 0.0567
110 M A 1.2739
111 T A 1.1345
112 L A 1.3687
113 S A 0.2049
114 K A -1.0299
115 S A -0.3670
116 T A -0.4354
117 C A -0.4789
118 Q A -1.8241
119 D A -2.7922
120 A A -1.6476
Download PDB file
View in 3Dmol
Play the video

Laboratory of Theory of Biopolymers 2018