Project name: bb351cc4da7332

Status: done

Started: 2026-06-22 16:03:26
Settings
Chain sequence(s) B: EAAREAKRAELEAFFDKIIALYEALGNEEAKERALKRKELLLEMLELATP
input PDB
Selected Chain(s) B
Distance of aggregation 10 Å
FoldX usage Yes
Dynamic mode No
Automated mutations No
Downloads Download all the data
Simulation log
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:00)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:00)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with B chain(s) selected             (00:00:00)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:00)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:00:00)
[INFO]       Analysis: Starting Aggrescan3D on folded.pdb                                          (00:01:07)
[INFO]       Main:     Simulation completed successfully.                                          (00:01:08)
Show buried residues

Minimal score value
-4.9525
Maximal score value
0.5715
Average score
-1.9458
Total score value
-97.2888

The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan3D score mutation
residue index residue name chain Aggrescan3D score
mutation
1 E B -2.8108
2 A B -1.8492
3 A B -1.7507
4 R B -3.1828
5 E B -3.6717
6 A B -2.6227
7 K B -3.1714
8 R B -3.1869
9 A B -2.1834
10 E B -2.7395
11 L B 0.0000
12 E B -2.1852
13 A B -1.3492
14 F B -0.0025
15 F B 0.0000
16 D B -2.1491
17 K B -1.7346
18 I B -0.4902
19 I B -1.3654
20 A B -0.8117
21 L B 0.2626
22 Y B -1.4451
23 E B -2.1818
24 A B -0.0732
25 L B 0.5715
26 G B -1.3765
27 N B -2.7494
28 E B -4.3183
29 E B -4.4682
30 A B -3.2545
31 K B -4.0131
32 E B -4.9525
33 R B -4.8600
34 A B 0.0000
35 L B -3.2937
36 K B -4.0305
37 R B -3.8552
38 K B -2.9747
39 E B -3.1554
40 L B -1.5880
41 L B -1.2319
42 L B -1.8282
43 E B -2.0600
44 M B -0.1265
45 L B 0.0000
46 E B -1.9492
47 L B 0.4535
48 A B -0.0225
49 T B -0.3285
50 P B -1.1825
Download PDB file
View in 3Dmol
Play the video

Laboratory of Theory of Biopolymers 2018