Project name: vhh4 [mutate: GE44H, WY57H]

Status: done

Started: 2026-05-14 20:19:50
Settings
Chain sequence(s) H: EVQLVESGGGLVQPGGSLRLSCAASGATFGNYGMGWFRQAPGKGRELVAAITSNGFWGYYPDSVEGRFTISRDNAKRMVYLQMNSLRAEDTAVYYCNARDSRFGKNGLDDYRAWGQGTQVTVSS
input PDB
Selected Chain(s) H
Distance of aggregation 10 Å
FoldX usage Yes
Dynamic mode No
Automated mutations No
Mutated residues WY57H,GE44H
Energy difference between WT (input) and mutated protein (by FoldX) -0.0175553 kcal/mol
Downloads Download all the data
Simulation log
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:09)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:09)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with H chain(s) selected             (00:00:09)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:09)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:00:09)
[INFO]       FoldX:    Building mutant model                                                       (00:01:13)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:01:22)
[INFO]       Analysis: Starting Aggrescan3D on folded.pdb                                          (00:01:57)
[INFO]       Main:     Simulation completed successfully.                                          (00:01:58)
Show buried residues

Minimal score value
-3.6549
Maximal score value
2.158
Average score
-0.8685
Total score value
-107.6936

The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan3D score mutation
residue index residue name chain Aggrescan3D score
mutation
1 E H -2.4485
2 V H 0.0000
3 Q H -1.4672
4 L H 0.0000
5 V H 1.2641
6 E H 0.0000
7 S H -0.5583
8 G H -1.1966
9 G H -0.7939
10 G H -0.1066
11 L H 1.0049
12 V H 0.0287
13 Q H -1.2435
14 P H -1.4781
15 G H -1.4019
16 G H -0.9785
17 S H -1.4243
18 L H -1.0411
19 R H -2.3335
20 L H 0.0000
21 S H -0.4079
22 C H 0.0000
23 A H -0.0752
24 A H 0.0000
25 S H -1.1245
26 G H -1.4320
27 A H -1.1743
28 T H -1.2062
29 F H 0.0000
30 G H -1.9282
31 N H -2.0952
32 Y H 0.0000
33 G H -0.8877
34 M H 0.0000
35 G H 0.0000
36 W H 0.0000
37 F H 0.0000
38 R H -1.4725
39 Q H -2.0951
40 A H -2.0153
41 P H -1.3692
42 G H -1.9430
43 K H -3.4133
44 E H -3.6549 mutated: GE44H
45 R H -2.8974
46 E H -2.8304
47 L H -0.7598
48 V H 0.0000
49 A H 0.0000
50 A H 0.5488
51 I H 0.0000
52 T H 0.3000
53 S H -1.1380
54 N H -0.8968
55 G H 0.2180
56 F H 2.1089
57 Y H 2.1580 mutated: WY57H
58 G H 1.2883
59 Y H 1.1244
60 Y H -0.3210
61 P H -1.3380
62 D H -2.4994
63 S H -1.8868
64 V H 0.0000
65 E H -2.6152
66 G H -1.9551
67 R H -1.8378
68 F H 0.0000
69 T H -0.9803
70 I H 0.0000
71 S H -0.2586
72 R H 0.0000
73 D H -2.4985
74 N H -3.0251
75 A H -1.9819
76 K H -2.7834
77 R H -2.5560
78 M H -1.2879
79 V H 0.0000
80 Y H 0.0000
81 L H 0.0000
82 Q H -1.6703
83 M H 0.0000
84 N H -1.9356
85 S H -1.3826
86 L H 0.0000
87 R H -2.1985
88 A H -1.6443
89 E H -2.2015
90 D H 0.0000
91 T H -0.8324
92 A H 0.0000
93 V H -0.3812
94 Y H 0.0000
95 Y H -0.2227
96 C H 0.0000
97 N H 0.0000
98 A H 0.0000
99 R H -1.5027
100 D H 0.0000
101 S H -1.5947
102 R H -1.8702
103 F H -0.7022
104 G H -1.8093
105 K H -2.7173
106 N H -2.2973
107 G H -1.3955
108 L H -0.6469
109 D H -2.1774
110 D H -2.0798
111 Y H -1.1839
112 R H -2.0162
113 A H 0.0000
114 W H -0.1483
115 G H -0.0729
116 Q H -0.6492
117 G H 0.0000
118 T H -0.6651
119 Q H -0.9826
120 V H 0.0000
121 T H -0.2623
122 V H 0.0000
123 S H -0.7276
124 S H -0.6533
Download PDB file
View in 3Dmol
Play the video

Laboratory of Theory of Biopolymers 2018