Project name: query_structure

Status: done

Started: 2026-03-17 00:06:03
Settings
Chain sequence(s) A: MASTSGVSDVPRDLEVVAATPTSLLISWDAPAVTVNNYRITYQPLLQGSSIQHFDVPGSKSTATISGLKPGVGYQITVYASTYTHSKAYYSLPISIYYRTEGSGS
input PDB
Selected Chain(s) A
Distance of aggregation 10 Å
FoldX usage Yes
Dynamic mode No
Automated mutations No
Downloads Download all the data
Simulation log
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:00)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:00)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with A chain(s) selected             (00:00:00)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:00)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:00:00)
[INFO]       Analysis: Starting Aggrescan3D on folded.pdb                                          (00:00:57)
[INFO]       Main:     Simulation completed successfully.                                          (00:00:57)
Show buried residues

Minimal score value
-3.3641
Maximal score value
1.7761
Average score
-0.353
Total score value
-37.0641

The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan3D score mutation
residue index residue name chain Aggrescan3D score
mutation
1 M A 1.0293
2 A A 0.4110
3 S A -0.1362
4 T A -0.0731
5 S A -0.1601
6 G A 0.1205
7 V A 1.4002
8 S A 0.4208
9 D A 0.4477
10 V A 0.2932
11 P A 0.0000
12 R A -3.0764
13 D A -3.3641
14 L A 0.0000
15 E A -1.8060
16 V A 0.3957
17 V A 1.5369
18 A A 0.8863
19 A A 0.0036
20 T A -0.7722
21 P A -1.8056
22 T A -1.2620
23 S A -0.6932
24 L A 0.0000
25 L A 0.7370
26 I A 0.0000
27 S A -1.1284
28 W A 0.0000
29 D A -3.2079
30 A A -1.6528
31 P A -0.4339
32 A A 0.3199
33 V A 0.6577
34 T A 0.0214
35 V A -0.2182
36 N A -0.7676
37 N A -1.2835
38 Y A 0.0000
39 R A -1.1321
40 I A 0.0000
41 T A 0.0000
42 Y A 0.1860
43 Q A 0.2143
44 P A 0.1336
45 L A 1.2573
46 L A 1.2707
47 Q A -0.4756
48 G A -0.2855
49 S A -0.1619
50 S A -0.0433
51 I A 0.7891
52 Q A -0.3413
53 H A -1.0341
54 F A -0.8788
55 D A -1.6477
56 V A 0.0000
57 P A -1.5099
58 G A -1.5033
59 S A -1.3101
60 K A -2.0576
61 S A -1.4586
62 T A -0.7627
63 A A 0.0000
64 T A 0.2338
65 I A 0.0000
66 S A -0.6522
67 G A -1.0039
68 L A 0.0000
69 K A -2.4589
70 P A -2.1356
71 G A -1.9326
72 V A 0.0000
73 G A 0.0000
74 Y A 0.0000
75 Q A 0.6459
76 I A 0.0000
77 T A 0.0000
78 V A 0.0000
79 Y A 0.5002
80 A A 0.0000
81 S A 0.0000
82 T A 0.3565
83 Y A 0.5825
84 T A -0.2456
85 H A -1.1777
86 S A -1.0247
87 K A -1.3703
88 A A -0.0591
89 Y A 0.9863
90 Y A 1.2785
91 S A 0.0000
92 L A 1.7761
93 P A 0.7397
94 I A 0.1571
95 S A 0.0705
96 I A 0.4461
97 Y A 1.0750
98 Y A -0.0724
99 R A -1.9618
100 T A 0.0000
101 E A -2.8116
102 G A -2.0160
103 S A -1.3969
104 G A -1.1488
105 S A -0.5327
Download PDB file
View in 3Dmol
Play the video

Laboratory of Theory of Biopolymers 2018