Project name: bb5b7246565c9b3

Status: done

Started: 2025-06-03 04:53:27
Settings
Chain sequence(s) H: QVQLVQSGAEVKKPGSSVKVSCKASGYTFTDNYMIWVRQAPGQGLEWMGDINPYNGGTTFNQKFKGRVTITADKSTSTAYMELSSLRSEDTAVYYCARESPYFSNLYVMDYWGQGTLVTVSS
L: EIVLTQSPATLSLSPGERATLSCKASQSVDYDGDNYMNWYQQKPGQAPRLLIYAASNLESGIPARFSGSGSGTDFTLTISSLEPEDFAVYYCHLSNEDLSTFGGGTKVEIK
input PDB
Selected Chain(s) H,L
Distance of aggregation 10 Å
FoldX usage Yes
Dynamic mode No
Automated mutations No
Downloads Download all the data
Simulation log
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:01)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:01)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with all chain(s) selected           (00:00:01)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:01)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:00:01)
[INFO]       Analysis: Starting Aggrescan3D on folded.pdb                                          (00:03:26)
[INFO]       Main:     Simulation completed successfully.                                          (00:03:29)
Show buried residues

Minimal score value
-2.6599
Maximal score value
2.2667
Average score
-0.5095
Total score value
-118.7154

The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan3D score mutation
residue index residue name chain Aggrescan3D score
mutation
1 Q H -1.5604
2 V H 0.0000
3 Q H -1.3928
4 L H 0.0000
5 V H 0.7798
6 Q H 0.0000
7 S H -0.2871
8 G H -0.4205
9 A H 0.2037
11 E H 0.2690
12 V H 1.2120
13 K H -0.4971
14 K H -1.5707
15 P H -1.8356
16 G H -1.2846
17 S H -1.0481
18 S H -0.9911
19 V H 0.0000
20 K H -1.1122
21 V H 0.0000
22 S H -0.2026
23 C H 0.0000
24 K H -0.4111
25 A H 0.0000
26 S H -0.7431
27 G H -1.0617
28 Y H -0.4785
29 T H -0.3629
30 F H 0.0000
35 T H -0.0613
36 D H 0.4570
37 N H 0.0000
38 Y H 0.4423
39 M H 0.0000
40 I H 0.0000
41 W H 0.0000
42 V H 0.0000
43 R H 0.0000
44 Q H -0.4778
45 A H -0.9198
46 P H -0.7481
47 G H -1.1921
48 Q H -1.7167
49 G H -1.0636
50 L H 0.0000
51 E H -0.7299
52 W H 0.0000
53 M H 0.0000
54 G H 0.0000
55 D H -0.1996
56 I H 0.0000
57 N H 0.0000
58 P H 0.0000
59 Y H 0.3307
62 N H -0.9517
63 G H -1.1153
64 G H -0.7697
65 T H -0.4358
66 T H -0.7101
67 F H -1.0213
68 N H -1.9901
69 Q H -2.6599
70 K H -2.5010
71 F H 0.0000
72 K H -2.0748
74 G H -1.4435
75 R H -1.2368
76 V H 0.0000
77 T H -0.5418
78 I H 0.0000
79 T H -0.3509
80 A H -0.6427
81 D H -1.3241
82 K H -1.9658
83 S H -1.2360
84 T H -0.9771
85 S H -1.2494
86 T H 0.0000
87 A H 0.0000
88 Y H -0.2301
89 M H 0.0000
90 E H -0.7611
91 L H 0.0000
92 S H -0.8318
93 S H -0.9750
94 L H 0.0000
95 R H -2.1847
96 S H -1.8127
97 E H -2.2640
98 D H 0.0000
99 T H -0.5412
100 A H 0.0000
101 V H 0.4171
102 Y H 0.0000
103 Y H 0.0000
104 C H 0.0000
105 A H 0.0000
106 R H -0.3283
107 E H 0.0000
108 S H 0.0000
109 P H 0.8677
110 Y H 2.1056
111 F H 2.2667
111A S H 0.7209
112A N H -0.6592
112 L H 0.0002
113 Y H 0.2375
114 V H 0.2598
115 M H 0.0000
116 D H -0.4633
117 Y H -0.5086
118 W H -0.2419
119 G H 0.0000
120 Q H -1.0836
121 G H -0.3357
122 T H 0.0000
123 L H 0.7612
124 V H 0.0000
125 T H 0.1103
126 V H 0.0000
127 S H -0.6274
128 S H -0.7280
1 E L -2.0931
2 I L 0.0000
3 V L 0.8362
4 L L 0.0000
5 T L -0.5143
6 Q L -0.5611
7 S L -0.6851
8 P L -0.4338
9 A L -0.4076
10 T L -0.4642
11 L L -0.0534
12 S L -0.1960
13 L L -0.5290
14 S L -0.9226
15 P L -1.3206
16 G L -1.6649
17 E L -2.0388
18 R L -2.4985
19 A L 0.0000
20 T L -0.5437
21 L L 0.0000
22 S L -0.8905
23 C L 0.0000
24 K L -1.9866
25 A L 0.0000
26 S L -0.6833
27 Q L -1.1089
28 S L -0.9106
29 V L 0.0000
30 D L -0.9824
31 Y L -0.2914
34 D L -1.7039
35 G L -1.3760
36 D L -1.2236
37 N L -0.9711
38 Y L -0.2232
39 M L 0.0000
40 N L 0.0000
41 W L 0.0000
42 Y L 0.0000
43 Q L 0.0000
44 Q L 0.0000
45 K L -1.1536
46 P L -0.9302
47 G L -1.2034
48 Q L -1.8298
49 A L -1.0870
50 P L 0.0000
51 R L -0.7121
52 L L 0.0000
53 L L 0.0000
54 I L 0.0000
55 Y L 0.1232
56 A L -0.4011
57 A L 0.0000
65 S L -0.7506
66 N L -1.0247
67 L L -0.1835
68 E L 0.0000
69 S L -0.4660
70 G L -0.4095
71 I L -0.1318
72 P L -0.2470
74 A L -0.0889
75 R L -0.5594
76 F L 0.0000
77 S L -0.4934
78 G L -0.5166
79 S L -0.9394
80 G L -1.3524
83 S L -1.3364
84 G L -1.1963
85 T L -1.7917
86 D L -2.6357
87 F L 0.0000
88 T L -0.8864
89 L L 0.0000
90 T L -0.5943
91 I L 0.0000
92 S L -1.1749
93 S L -1.5255
94 L L 0.0000
95 E L -2.0623
96 P L -1.3770
97 E L -2.1864
98 D L 0.0000
99 F L -0.3573
100 A L 0.0000
101 V L -0.2018
102 Y L 0.0000
103 Y L 0.0000
104 C L 0.0000
105 H L 0.0000
106 L L 0.0000
107 S L -0.8714
108 N L -1.6011
109 E L -2.1738
114 D L -2.5863
115 L L 0.0000
116 S L 0.0000
117 T L -0.4584
118 F L 0.0000
119 G L 0.0000
120 G L -0.5807
121 G L -0.7562
122 T L 0.0000
123 K L -1.0248
124 V L 0.0000
125 E L 0.0873
126 I L 0.9623
127 K L -0.8852
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Laboratory of Theory of Biopolymers 2018