Project name: AF-P37840_301e8c1ff068f28

Status: done

Started: 2024-07-23 06:49:56
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Chain sequence(s) A: MDVFMKGLSKAKEGVVAAAEKTKQGVAEAAGKTKEGVLYVGSKTKEGVVHGVATVAEKTKEQVTNVGGAVVTGVTAVAQKTVEGAGSIAAATGFVKKDQLGKNEEGAPQEGILEDMPVDPDNEAYEMPSEEGYQDYEPEA
input PDB
Selected Chain(s) A
Distance of aggregation 10 Å
FoldX usage Yes
Dynamic mode No
Automated mutations No
Mutated residues AT53A
Energy difference between WT (input) and mutated protein (by FoldX) 0.3168 kcal/mol
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Simulation log
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:00)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:00)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with A chain(s) selected             (00:00:00)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:00)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:00:00)
[INFO]       FoldX:    Building mutant model                                                       (00:02:09)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:02:11)
[INFO]       Analysis: Starting Aggrescan3D on folded.pdb                                          (00:03:14)
[INFO]       Main:     Simulation completed successfully.                                          (00:03:15)
Show buried residues

Minimal score value
-4.01
Maximal score value
3.3186
Average score
-0.7683
Total score value
-107.5672

The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan3D score mutation
residue index residue name chain Aggrescan3D score
mutation
1 M A 1.2478
2 D A 0.0106
3 V A 1.8080
4 F A 2.2447
5 M A 0.8945
6 K A -0.9620
7 G A -0.5995
8 L A -0.4135
9 S A -1.5160
10 K A -2.5684
11 A A -1.5764
12 K A -2.1648
13 E A -2.1459
14 G A -0.9375
15 V A 0.6361
16 V A 0.5341
17 A A -0.6896
18 A A -0.8113
19 A A -1.1363
20 E A -2.7185
21 K A -2.9316
22 T A -2.2989
23 K A -3.2342
24 Q A -3.1530
25 G A -1.9434
26 V A -0.3279
27 A A -1.3953
28 E A -2.6053
29 A A -1.6892
30 A A -1.5534
31 G A -2.3730
32 K A -3.1247
33 T A -1.8494
34 K A -2.3104
35 E A -1.7752
36 G A 0.0677
37 V A 1.6759
38 L A 1.7028
39 Y A 1.8296
40 V A 1.9626
41 G A 0.5702
42 S A -0.3326
43 K A -1.3453
44 T A -1.0176
45 K A -2.0415
46 E A -2.3354
47 G A -1.1588
48 V A 1.0777
49 V A 1.4034
50 H A 0.1658
51 G A 1.0358
52 V A 2.3597
53 T A 0.9111 mutated: AT53A
54 T A 0.1829
55 V A 0.7297
56 A A -1.0725
57 E A -2.9498
58 K A -3.0474
59 T A -2.4229
60 K A -3.3751
61 E A -3.7751
62 Q A -2.6906
63 V A -0.5333
64 T A -1.0980
65 N A -1.2549
66 V A 0.9118
67 G A 1.0394
68 G A 0.7991
69 A A 1.6540
70 V A 2.9855
71 V A 3.3186
72 T A 2.0511
73 G A 2.1099
74 V A 3.0353
75 T A 1.5156
76 A A 0.9716
77 V A 1.6667
78 A A 0.4881
79 Q A -0.9047
80 K A -1.5634
81 T A -0.5345
82 V A 0.3204
83 E A -1.6111
84 G A -0.7187
85 A A 0.1566
86 G A 0.0184
87 S A 0.3025
88 I A 1.9308
89 A A 1.3146
90 A A 1.2271
91 A A 1.0751
92 T A 1.1981
93 G A 0.8588
94 F A 2.0330
95 V A 0.9112
96 K A -1.6839
97 K A -2.6268
98 D A -3.1693
99 Q A -2.5647
100 L A -0.8736
101 G A -1.9952
102 K A -3.0640
103 N A -3.4809
104 E A -4.0100
105 E A -3.5416
106 G A -2.3426
107 A A -1.7675
108 P A -1.8165
109 Q A -2.1118
110 E A -1.7986
111 G A -0.6105
112 I A 0.8194
113 L A 0.9009
114 E A -0.9854
115 D A -1.1813
116 M A -0.0075
117 P A -0.2989
118 V A 0.2473
119 D A -2.1804
120 P A -2.2639
121 D A -3.4454
122 N A -3.0805
123 E A -3.1103
124 A A -1.3561
125 Y A -0.0930
126 E A -1.0333
127 M A 0.0492
128 P A -0.9962
129 S A -1.9094
130 E A -2.5436
131 E A -2.8674
132 G A -1.9756
133 Y A -0.6972
134 Q A -1.7345
135 D A -1.9995
136 Y A -0.9296
137 E A -2.5289
138 P A -1.8737
139 E A -2.2307
140 A A -1.1604
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Laboratory of Theory of Biopolymers 2018