Chain sequence(s) |
A: MDVFMKGLSKAKEGVVAAAEKTKQGVAEAAGKTKEGVLYVGSKTKEGVVHGVATVAEKTKEQVTNVGGAVVTGVTAVAQKTVEGAGSIAAATGFVKKDQLGKNEEGAPQEGILEDMPVDPDNEAYEMPSEEGYQDYEPEA
input PDB |
Selected Chain(s) | A |
Distance of aggregation | 10 Å |
FoldX usage | Yes |
Dynamic mode | No |
Automated mutations | No |
Mutated residues | AT53A |
Energy difference between WT (input) and mutated protein (by FoldX) | 0.3168 kcal/mol |
Downloads | Download all the data |
Simulation log |
[INFO] Logger: Verbosity set to: 2 - [INFO] (00:00:00) [WARNING] runJob: Working directory already exists (possibly overwriting previous results -ow to prevent this behavior) (00:00:00) [INFO] runJob: Starting aggrescan3d job on: input.pdb with A chain(s) selected (00:00:00) [INFO] runJob: Creating pdb object from: input.pdb (00:00:00) [INFO] FoldX: Starting FoldX energy minimalization (00:00:00) [INFO] FoldX: Building mutant model (00:02:09) [INFO] FoldX: Starting FoldX energy minimalization (00:02:11) [INFO] Analysis: Starting Aggrescan3D on folded.pdb (00:03:14) [INFO] Main: Simulation completed successfully. (00:03:15) |
The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.
residue index | residue name | chain | Aggrescan3D score | mutation |
---|---|---|---|---|
residue index | residue name | chain | Aggrescan3D score | |
1 | M | A | 1.2478 | |
2 | D | A | 0.0106 | |
3 | V | A | 1.8080 | |
4 | F | A | 2.2447 | |
5 | M | A | 0.8945 | |
6 | K | A | -0.9620 | |
7 | G | A | -0.5995 | |
8 | L | A | -0.4135 | |
9 | S | A | -1.5160 | |
10 | K | A | -2.5684 | |
11 | A | A | -1.5764 | |
12 | K | A | -2.1648 | |
13 | E | A | -2.1459 | |
14 | G | A | -0.9375 | |
15 | V | A | 0.6361 | |
16 | V | A | 0.5341 | |
17 | A | A | -0.6896 | |
18 | A | A | -0.8113 | |
19 | A | A | -1.1363 | |
20 | E | A | -2.7185 | |
21 | K | A | -2.9316 | |
22 | T | A | -2.2989 | |
23 | K | A | -3.2342 | |
24 | Q | A | -3.1530 | |
25 | G | A | -1.9434 | |
26 | V | A | -0.3279 | |
27 | A | A | -1.3953 | |
28 | E | A | -2.6053 | |
29 | A | A | -1.6892 | |
30 | A | A | -1.5534 | |
31 | G | A | -2.3730 | |
32 | K | A | -3.1247 | |
33 | T | A | -1.8494 | |
34 | K | A | -2.3104 | |
35 | E | A | -1.7752 | |
36 | G | A | 0.0677 | |
37 | V | A | 1.6759 | |
38 | L | A | 1.7028 | |
39 | Y | A | 1.8296 | |
40 | V | A | 1.9626 | |
41 | G | A | 0.5702 | |
42 | S | A | -0.3326 | |
43 | K | A | -1.3453 | |
44 | T | A | -1.0176 | |
45 | K | A | -2.0415 | |
46 | E | A | -2.3354 | |
47 | G | A | -1.1588 | |
48 | V | A | 1.0777 | |
49 | V | A | 1.4034 | |
50 | H | A | 0.1658 | |
51 | G | A | 1.0358 | |
52 | V | A | 2.3597 | |
53 | T | A | 0.9111 | mutated: AT53A |
54 | T | A | 0.1829 | |
55 | V | A | 0.7297 | |
56 | A | A | -1.0725 | |
57 | E | A | -2.9498 | |
58 | K | A | -3.0474 | |
59 | T | A | -2.4229 | |
60 | K | A | -3.3751 | |
61 | E | A | -3.7751 | |
62 | Q | A | -2.6906 | |
63 | V | A | -0.5333 | |
64 | T | A | -1.0980 | |
65 | N | A | -1.2549 | |
66 | V | A | 0.9118 | |
67 | G | A | 1.0394 | |
68 | G | A | 0.7991 | |
69 | A | A | 1.6540 | |
70 | V | A | 2.9855 | |
71 | V | A | 3.3186 | |
72 | T | A | 2.0511 | |
73 | G | A | 2.1099 | |
74 | V | A | 3.0353 | |
75 | T | A | 1.5156 | |
76 | A | A | 0.9716 | |
77 | V | A | 1.6667 | |
78 | A | A | 0.4881 | |
79 | Q | A | -0.9047 | |
80 | K | A | -1.5634 | |
81 | T | A | -0.5345 | |
82 | V | A | 0.3204 | |
83 | E | A | -1.6111 | |
84 | G | A | -0.7187 | |
85 | A | A | 0.1566 | |
86 | G | A | 0.0184 | |
87 | S | A | 0.3025 | |
88 | I | A | 1.9308 | |
89 | A | A | 1.3146 | |
90 | A | A | 1.2271 | |
91 | A | A | 1.0751 | |
92 | T | A | 1.1981 | |
93 | G | A | 0.8588 | |
94 | F | A | 2.0330 | |
95 | V | A | 0.9112 | |
96 | K | A | -1.6839 | |
97 | K | A | -2.6268 | |
98 | D | A | -3.1693 | |
99 | Q | A | -2.5647 | |
100 | L | A | -0.8736 | |
101 | G | A | -1.9952 | |
102 | K | A | -3.0640 | |
103 | N | A | -3.4809 | |
104 | E | A | -4.0100 | |
105 | E | A | -3.5416 | |
106 | G | A | -2.3426 | |
107 | A | A | -1.7675 | |
108 | P | A | -1.8165 | |
109 | Q | A | -2.1118 | |
110 | E | A | -1.7986 | |
111 | G | A | -0.6105 | |
112 | I | A | 0.8194 | |
113 | L | A | 0.9009 | |
114 | E | A | -0.9854 | |
115 | D | A | -1.1813 | |
116 | M | A | -0.0075 | |
117 | P | A | -0.2989 | |
118 | V | A | 0.2473 | |
119 | D | A | -2.1804 | |
120 | P | A | -2.2639 | |
121 | D | A | -3.4454 | |
122 | N | A | -3.0805 | |
123 | E | A | -3.1103 | |
124 | A | A | -1.3561 | |
125 | Y | A | -0.0930 | |
126 | E | A | -1.0333 | |
127 | M | A | 0.0492 | |
128 | P | A | -0.9962 | |
129 | S | A | -1.9094 | |
130 | E | A | -2.5436 | |
131 | E | A | -2.8674 | |
132 | G | A | -1.9756 | |
133 | Y | A | -0.6972 | |
134 | Q | A | -1.7345 | |
135 | D | A | -1.9995 | |
136 | Y | A | -0.9296 | |
137 | E | A | -2.5289 | |
138 | P | A | -1.8737 | |
139 | E | A | -2.2307 | |
140 | A | A | -1.1604 |