Project name: CM163-183 Mod2

Status: done

Started: 2026-02-20 13:12:49
Settings
Chain sequence(s) A: TRNVANQIDPYLRKFYLAGRP
input PDB
Selected Chain(s) A
Distance of aggregation 10 Å
FoldX usage Yes
Dynamic mode No
Automated mutations No
Downloads Download all the data
Simulation log
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:01)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:01)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with A chain(s) selected             (00:00:01)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:01)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:00:01)
[INFO]       Analysis: Starting Aggrescan3D on folded.pdb                                          (00:00:15)
[INFO]       Main:     Simulation completed successfully.                                          (00:00:15)
Show buried residues

Minimal score value
-2.8892
Maximal score value
1.6547
Average score
-0.6842
Total score value
-14.3676

The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan3D score mutation
residue index residue name chain Aggrescan3D score
mutation
1 T A -1.4678
2 R A -2.7624
3 N A -2.5303
4 V A -1.1478
5 A A -1.7309
6 N A -2.8892
7 Q A -2.4420
8 I A -0.8546
9 D A -1.6897
10 P A -0.7352
11 Y A 1.0673
12 L A 0.8137
13 R A -0.1435
14 K A -0.3058
15 F A 1.0769
16 Y A 1.6547
17 L A 1.5693
18 A A 0.3338
19 G A -0.4453
20 R A -1.2614
21 P A -0.4774
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Laboratory of Theory of Biopolymers 2018