| Chain sequence(s) |
A: TRNVANQIDPYLRKFYLAGRP
input PDB |
| Selected Chain(s) | A |
| Distance of aggregation | 10 Å |
| FoldX usage | Yes |
| Dynamic mode | No |
| Automated mutations | No |
| Downloads | Download all the data |
| Simulation log |
[INFO] Logger: Verbosity set to: 2 - [INFO] (00:00:01)
[WARNING] runJob: Working directory already exists (possibly overwriting previous results -ow
to prevent this behavior) (00:00:01)
[INFO] runJob: Starting aggrescan3d job on: input.pdb with A chain(s) selected (00:00:01)
[INFO] runJob: Creating pdb object from: input.pdb (00:00:01)
[INFO] FoldX: Starting FoldX energy minimalization (00:00:01)
[INFO] Analysis: Starting Aggrescan3D on folded.pdb (00:00:15)
[INFO] Main: Simulation completed successfully. (00:00:15)
|
The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.
| residue index | residue name | chain | Aggrescan3D score | mutation |
|---|---|---|---|---|
| residue index | residue name | chain | Aggrescan3D score | |
| 1 | T | A | -1.4678 | |
| 2 | R | A | -2.7624 | |
| 3 | N | A | -2.5303 | |
| 4 | V | A | -1.1478 | |
| 5 | A | A | -1.7309 | |
| 6 | N | A | -2.8892 | |
| 7 | Q | A | -2.4420 | |
| 8 | I | A | -0.8546 | |
| 9 | D | A | -1.6897 | |
| 10 | P | A | -0.7352 | |
| 11 | Y | A | 1.0673 | |
| 12 | L | A | 0.8137 | |
| 13 | R | A | -0.1435 | |
| 14 | K | A | -0.3058 | |
| 15 | F | A | 1.0769 | |
| 16 | Y | A | 1.6547 | |
| 17 | L | A | 1.5693 | |
| 18 | A | A | 0.3338 | |
| 19 | G | A | -0.4453 | |
| 20 | R | A | -1.2614 | |
| 21 | P | A | -0.4774 |