| Chain sequence(s) |
A: GGVCPKILQRCRRDSDCPGACICRGNGYCGYPYDVPDYA
input PDB |
| Selected Chain(s) | A |
| Distance of aggregation | 10 Å |
| FoldX usage | Yes |
| Dynamic mode | No |
| Automated mutations | No |
| Downloads | Download all the data |
| Simulation log |
[INFO] Logger: Verbosity set to: 2 - [INFO] (00:00:00)
[WARNING] runJob: Working directory already exists (possibly overwriting previous results -ow
to prevent this behavior) (00:00:00)
[INFO] runJob: Starting aggrescan3d job on: input.pdb with A chain(s) selected (00:00:00)
[INFO] runJob: Creating pdb object from: input.pdb (00:00:00)
[INFO] FoldX: Starting FoldX energy minimalization (00:00:00)
[INFO] Analysis: Starting Aggrescan3D on folded.pdb (00:00:21)
[INFO] Main: Simulation completed successfully. (00:00:21)
|
The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.
| residue index | residue name | chain | Aggrescan3D score | mutation |
|---|---|---|---|---|
| residue index | residue name | chain | Aggrescan3D score | |
| 1 | G | A | -0.2702 | |
| 2 | G | A | 0.2736 | |
| 3 | V | A | 0.4858 | |
| 4 | C | A | 0.0000 | |
| 5 | P | A | 0.0464 | |
| 6 | K | A | -0.1916 | |
| 7 | I | A | 1.6453 | |
| 8 | L | A | 1.5747 | |
| 9 | Q | A | -0.6679 | |
| 10 | R | A | -2.4885 | |
| 11 | C | A | -2.8468 | |
| 12 | R | A | -3.5222 | |
| 13 | R | A | -3.5703 | |
| 14 | D | A | -2.2876 | |
| 15 | S | A | -1.6759 | |
| 16 | D | A | -2.3728 | |
| 17 | C | A | 0.0000 | |
| 18 | P | A | -0.8721 | |
| 19 | G | A | -0.7771 | |
| 20 | A | A | -0.1249 | |
| 21 | C | A | 0.0000 | |
| 22 | I | A | 0.1015 | |
| 23 | C | A | -1.6387 | |
| 24 | R | A | -1.8311 | |
| 25 | G | A | -1.4464 | |
| 26 | N | A | -1.9031 | |
| 27 | G | A | -2.1440 | |
| 28 | Y | A | -1.5227 | |
| 29 | C | A | 0.0000 | |
| 30 | G | A | 0.0000 | |
| 31 | Y | A | 0.7704 | |
| 32 | P | A | 0.0000 | |
| 33 | Y | A | 0.7887 | |
| 34 | D | A | -0.6996 | |
| 35 | V | A | -0.0862 | |
| 36 | P | A | -0.8494 | |
| 37 | D | A | -1.5738 | |
| 38 | Y | A | -0.3655 | |
| 39 | A | A | -0.0455 |