| Chain sequence(s) |
A: GGGHKFG
C: GGGHKFG B: GGGHKFG D: GGGHKFG input PDB |
| Selected Chain(s) | A,C,B,D |
| Distance of aggregation | 10 Å |
| FoldX usage | Yes |
| Dynamic mode | No |
| Automated mutations | No |
| Downloads | Download all the data |
| Simulation log |
[INFO] Logger: Verbosity set to: 2 - [INFO] (00:00:00)
[WARNING] runJob: Working directory already exists (possibly overwriting previous results -ow
to prevent this behavior) (00:00:00)
[INFO] runJob: Starting aggrescan3d job on: input.pdb with all chain(s) selected (00:00:01)
[INFO] runJob: Creating pdb object from: input.pdb (00:00:01)
[INFO] FoldX: Starting FoldX energy minimalization (00:00:01)
[INFO] Analysis: Starting Aggrescan3D on folded.pdb (00:00:30)
[INFO] Main: Simulation completed successfully. (00:00:31)
|
The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.
| residue index | residue name | chain | Aggrescan3D score | mutation |
|---|---|---|---|---|
| residue index | residue name | chain | Aggrescan3D score | |
| 1 | G | A | -1.1730 | |
| 2 | G | A | -1.4705 | |
| 3 | G | A | -2.1804 | |
| 4 | H | A | -1.8909 | |
| 5 | K | A | -2.5457 | |
| 6 | F | A | -1.1347 | |
| 7 | G | A | -0.7814 | |
| 1 | G | B | -1.1125 | |
| 2 | G | B | -1.5654 | |
| 3 | G | B | -2.1627 | |
| 4 | H | B | -2.4297 | |
| 5 | K | B | -2.4744 | |
| 6 | F | B | -0.5424 | |
| 7 | G | B | -0.5732 | |
| 1 | G | C | -1.1091 | |
| 2 | G | C | -1.5324 | |
| 3 | G | C | -2.0521 | |
| 4 | H | C | -2.0906 | |
| 5 | K | C | -2.6111 | |
| 6 | F | C | -1.2400 | |
| 7 | G | C | -0.8372 | |
| 1 | G | D | -1.1736 | |
| 2 | G | D | -1.4868 | |
| 3 | G | D | -2.2324 | |
| 4 | H | D | -2.1930 | |
| 5 | K | D | -2.4611 | |
| 6 | F | D | -0.6003 | |
| 7 | G | D | -0.6560 |