Project name: bd07da08ccbbbb

Status: done

Started: 2025-06-03 05:23:19
Settings
Chain sequence(s) H: QFQLVQSGAEVKKPGASVKVSCKASGYSFTDYNVNWVRQAPGQGLEWIGVINPKYGTTRYNQKFKGRATLTVDKSTSTAYMELSSLRSEDTAVYYCTRGLNAWDYWGQGTLVTVSS
L: DIQMTQSPSSLSASVGDRVTITCGASENIYGALNWYQQKPGKAPKLLIYGATNLEDGVPSRFSGSGSGRDYTFTISSLQPEDIATYYCQNVLTTPYTFGQGTKLEIK
input PDB
Selected Chain(s) H,L
Distance of aggregation 10 Å
FoldX usage Yes
Dynamic mode No
Automated mutations No
Downloads Download all the data
Simulation log
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:00)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:00)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with all chain(s) selected           (00:00:00)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:00)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:00:00)
[INFO]       Analysis: Starting Aggrescan3D on folded.pdb                                          (00:01:59)
[INFO]       Main:     Simulation completed successfully.                                          (00:02:01)
Show buried residues

Minimal score value
-3.1986
Maximal score value
1.0792
Average score
-0.6232
Total score value
-138.9828

The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan3D score mutation
residue index residue name chain Aggrescan3D score
mutation
1 Q H -0.8534
2 F H 0.3703
3 Q H -0.2388
4 L H 0.0000
5 V H 0.8356
6 Q H 0.0000
7 S H -0.3216
8 G H -0.3493
9 A H 0.3791
11 E H 0.2743
12 V H 1.0792
13 K H -0.8558
14 K H -2.0774
15 P H -1.8747
16 G H -1.4133
17 A H -1.1539
18 S H -1.2176
19 V H 0.0000
20 K H -1.4992
21 V H 0.0000
22 S H -0.3227
23 C H 0.0000
24 K H -0.6347
25 A H 0.0000
26 S H -0.3333
27 G H -0.5489
28 Y H -0.3414
29 S H -0.5454
30 F H 0.0000
35 T H -1.4604
36 D H -1.8335
37 Y H -0.6570
38 N H -0.5400
39 V H 0.0000
40 N H 0.0000
41 W H 0.0000
42 V H 0.0000
43 R H -0.2865
44 Q H -0.5487
45 A H -0.9070
46 P H -0.9182
47 G H -1.2174
48 Q H -1.8466
49 G H -1.3389
50 L H 0.0000
51 E H -0.9059
52 W H 0.0000
53 I H 0.0000
54 G H 0.0000
55 V H -0.5309
56 I H 0.0000
57 N H -0.6608
58 P H 0.0000
59 K H -1.2198
62 Y H 0.6259
63 G H -0.3783
64 T H -0.3974
65 T H -0.8161
66 R H -2.1607
67 Y H -1.8572
68 N H -2.1759
69 Q H -3.0530
70 K H -2.9519
71 F H 0.0000
72 K H -3.1986
74 G H -1.9950
75 R H -1.7478
76 A H 0.0000
77 T H -1.0188
78 L H 0.0000
79 T H -0.3536
80 V H -0.6044
81 D H -1.3385
82 K H -2.0752
83 S H -1.1272
84 T H -0.9671
85 S H -1.1704
86 T H -0.7708
87 A H 0.0000
88 Y H -0.3433
89 M H 0.0000
90 E H -1.0556
91 L H 0.0000
92 S H -1.0702
93 S H -1.1491
94 L H 0.0000
95 R H -2.6243
96 S H -2.1350
97 E H -2.3986
98 D H 0.0000
99 T H -0.6357
100 A H 0.0000
101 V H 0.6113
102 Y H 0.0000
103 Y H 0.0000
104 C H 0.0000
105 T H 0.0000
106 R H 0.0000
107 G H 0.0000
108 L H 0.5037
109 N H -0.4140
114 A H 0.0441
115 W H 0.0000
116 D H -0.0545
117 Y H 0.2161
118 W H 0.1048
119 G H 0.0000
120 Q H -1.1231
121 G H -0.4050
122 T H 0.0000
123 L H 1.0185
124 V H 0.0000
125 T H -0.0005
126 V H 0.0000
127 S H -0.8794
128 S H -0.9272
1 D L -2.3668
2 I L 0.0000
3 Q L -1.9818
4 M L 0.0000
5 T L -0.8924
6 Q L 0.0000
7 S L -0.4307
8 P L -0.6056
9 S L -0.8784
10 S L -1.0891
11 L L -0.8227
12 S L -1.2136
13 A L 0.0000
14 S L -0.8109
15 V L 0.0230
16 G L -0.6193
17 D L -1.7030
18 R L -2.2413
19 V L 0.0000
20 T L -0.6185
21 I L 0.0000
22 T L -0.5362
23 C L 0.0000
24 G L -1.6490
25 A L 0.0000
26 S L -2.0042
27 E L -2.4536
28 N L -1.7168
29 I L 0.0000
36 Y L 0.5055
37 G L -0.0055
38 A L 0.2779
39 L L 0.0000
40 N L 0.0000
41 W L 0.0000
42 Y L 0.0000
43 Q L 0.0000
44 Q L 0.0000
45 K L -1.6252
46 P L -1.1576
47 G L -1.6299
48 K L -2.5203
49 A L -1.4555
50 P L 0.0000
51 K L -0.8509
52 L L 0.0000
53 L L 0.0000
54 I L 0.0000
55 Y L 0.0898
56 G L -0.1437
57 A L 0.0000
65 T L -0.4567
66 N L -0.7311
67 L L -0.3138
68 E L -1.0507
69 D L -2.0383
70 G L -1.2611
71 V L -0.7569
72 P L -0.5678
74 S L -0.3873
75 R L -0.7586
76 F L 0.0000
77 S L -0.3906
78 G L -0.3279
79 S L -0.8481
80 G L -1.0974
83 S L -1.0351
84 G L -1.3661
85 R L -2.5722
86 D L -2.6957
87 Y L 0.0000
88 T L -0.6538
89 F L 0.0000
90 T L -0.5924
91 I L 0.0000
92 S L -1.2594
93 S L -1.1096
94 L L 0.0000
95 Q L -0.6267
96 P L -1.0410
97 E L -1.6444
98 D L 0.0000
99 I L -0.6381
100 A L 0.0000
101 T L -1.0004
102 Y L 0.0000
103 Y L 0.0000
104 C L 0.0000
105 Q L 0.0000
106 N L 0.0000
107 V L 0.0000
108 L L 0.5688
109 T L -0.1032
114 T L -0.5905
115 P L -1.1061
116 Y L -0.3060
117 T L -0.6299
118 F L 0.0000
119 G L 0.0000
120 Q L -1.6213
121 G L 0.0000
122 T L 0.0000
123 K L -1.8489
124 L L 0.0000
125 E L -1.6540
126 I L -0.9399
127 K L -1.6408
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Laboratory of Theory of Biopolymers 2018