| Chain sequence(s) |
A: QVQLVQSGAEVKKPGSSVKVSCKASGFTFSSNVIGWFRQAPGQGLEFMGGVIPIVDIANYAQRFKGRVTITADISTSTTYMELSSLRSEDTAVYYCAASQYISRSVDEYDYWGQGTLVTVSS
input PDB |
| Selected Chain(s) | A |
| Distance of aggregation | 10 Å |
| FoldX usage | No |
| Dynamic mode | No |
| Automated mutations | No |
| Downloads | Download all the data |
| Simulation log |
[INFO] Logger: Verbosity set to: 2 - [INFO] (00:00:00)
[WARNING] runJob: Working directory already exists (possibly overwriting previous results -ow
to prevent this behavior) (00:00:00)
[INFO] runJob: Starting aggrescan3d job on: input.pdb with A chain(s) selected (00:00:00)
[INFO] runJob: Creating pdb object from: input.pdb (00:00:00)
[INFO] runJob: FoldX not utilized. Treating input pdb file as it was already optimized. (00:00:00)
[INFO] Analysis: Starting Aggrescan3D on folded.pdb (00:00:00)
[INFO] Main: Simulation completed successfully. (00:00:01)
|
The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.
| residue index | residue name | chain | Aggrescan3D score | mutation |
|---|---|---|---|---|
| residue index | residue name | chain | Aggrescan3D score | |
| 2 | Q | A | -1.1928 | |
| 3 | V | A | -0.3426 | |
| 4 | Q | A | -0.9730 | |
| 5 | L | A | 0.0000 | |
| 6 | V | A | 0.5340 | |
| 7 | Q | A | -0.1600 | |
| 8 | S | A | -0.4992 | |
| 9 | G | A | -0.3577 | |
| 10 | A | A | 0.3951 | |
| 11 | E | A | 0.2842 | |
| 12 | V | A | 1.1267 | |
| 13 | K | A | -0.8873 | |
| 14 | K | A | -2.1867 | |
| 15 | P | A | -2.2903 | |
| 16 | G | A | -1.6193 | |
| 17 | S | A | -1.3254 | |
| 18 | S | A | -1.4566 | |
| 19 | V | A | 0.0000 | |
| 20 | K | A | -2.1360 | |
| 21 | V | A | 0.0000 | |
| 22 | S | A | -0.6803 | |
| 23 | C | A | 0.0000 | |
| 24 | K | A | -1.3301 | |
| 25 | A | A | 0.0000 | |
| 26 | S | A | -0.4897 | |
| 27 | G | A | -0.1654 | |
| 28 | F | A | 1.3466 | |
| 29 | T | A | 1.0655 | |
| 30 | F | A | 0.0000 | |
| 31 | S | A | 1.3045 | |
| 32 | S | A | 0.8607 | |
| 33 | N | A | 0.7400 | |
| 34 | V | A | 1.4179 | |
| 35 | I | A | 0.0000 | |
| 36 | G | A | 0.0000 | |
| 37 | W | A | 0.0000 | |
| 38 | F | A | 0.0000 | |
| 39 | R | A | 0.0000 | |
| 40 | Q | A | -0.2481 | |
| 41 | A | A | -0.8492 | |
| 42 | P | A | -1.1631 | |
| 43 | G | A | -1.1979 | |
| 44 | Q | A | -1.5849 | |
| 45 | G | A | -0.5805 | |
| 46 | L | A | 0.9057 | |
| 47 | E | A | 0.3583 | |
| 48 | F | A | 1.0103 | |
| 49 | M | A | 0.0000 | |
| 50 | G | A | 0.0000 | |
| 51 | G | A | 0.0000 | |
| 52 | V | A | 0.0000 | |
| 53 | I | A | 1.8454 | |
| 54 | P | A | 0.0000 | |
| 55 | I | A | 2.8842 | |
| 56 | V | A | 2.2986 | |
| 57 | D | A | 0.6957 | |
| 58 | I | A | 1.9463 | |
| 59 | A | A | 0.5757 | |
| 60 | N | A | -0.6613 | |
| 61 | Y | A | -0.6563 | |
| 62 | A | A | -1.2420 | |
| 63 | Q | A | -2.6816 | |
| 64 | R | A | -2.7874 | |
| 65 | F | A | 0.0000 | |
| 66 | K | A | -2.9268 | |
| 67 | G | A | -1.7334 | |
| 68 | R | A | -1.3560 | |
| 69 | V | A | 0.0000 | |
| 70 | T | A | -0.9451 | |
| 71 | I | A | 0.0000 | |
| 72 | T | A | -0.0150 | |
| 73 | A | A | 0.1854 | |
| 74 | D | A | -0.3331 | |
| 75 | I | A | 1.2392 | |
| 76 | S | A | 0.3099 | |
| 77 | T | A | -0.1779 | |
| 78 | S | A | -0.0422 | |
| 79 | T | A | 0.0000 | |
| 80 | T | A | 0.0000 | |
| 81 | Y | A | -0.7570 | |
| 82 | M | A | 0.0000 | |
| 83 | E | A | -1.6640 | |
| 84 | L | A | 0.0000 | |
| 85 | S | A | -1.1479 | |
| 86 | S | A | -1.1951 | |
| 87 | L | A | 0.0000 | |
| 88 | R | A | -2.8589 | |
| 89 | S | A | -2.2411 | |
| 90 | E | A | -2.3401 | |
| 91 | D | A | 0.0000 | |
| 92 | T | A | -0.5997 | |
| 93 | A | A | 0.0000 | |
| 94 | V | A | 0.6881 | |
| 95 | Y | A | 0.0000 | |
| 96 | Y | A | 0.4196 | |
| 97 | C | A | 0.0000 | |
| 98 | A | A | 0.0000 | |
| 99 | A | A | 0.0000 | |
| 100 | S | A | -0.3338 | |
| 101 | Q | A | -0.4131 | |
| 102 | Y | A | 0.7869 | |
| 103 | I | A | 0.3847 | |
| 104 | S | A | -0.3747 | |
| 105 | R | A | -1.4371 | |
| 106 | S | A | -0.3464 | |
| 107 | V | A | 0.6483 | |
| 108 | D | A | -1.2165 | |
| 109 | E | A | -1.6792 | |
| 110 | Y | A | -0.5978 | |
| 111 | D | A | -0.9339 | |
| 112 | Y | A | -0.0190 | |
| 113 | W | A | 0.4587 | |
| 114 | G | A | 0.0000 | |
| 115 | Q | A | -0.7194 | |
| 116 | G | A | -0.0620 | |
| 117 | T | A | 0.0000 | |
| 118 | L | A | 1.0633 | |
| 119 | V | A | 0.0000 | |
| 120 | T | A | 0.0324 | |
| 121 | V | A | 0.0000 | |
| 122 | S | A | -0.8376 | |
| 123 | S | A | -0.7533 |