Project name: GHKGHKG4

Status: done

Started: 2026-02-20 13:15:45
Settings
Chain sequence(s) A: GHKGHKG
C: GHKGHKG
B: GHKGHKG
D: GHKGHKG
input PDB
Selected Chain(s) A,C,B,D
Distance of aggregation 10 Å
FoldX usage Yes
Dynamic mode No
Automated mutations No
Downloads Download all the data
Simulation log
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:01)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:01)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with all chain(s) selected           (00:00:01)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:01)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:00:01)
[INFO]       Analysis: Starting Aggrescan3D on folded.pdb                                          (00:02:19)
[INFO]       Main:     Simulation completed successfully.                                          (00:02:20)
Show buried residues

Minimal score value
-5.4894
Maximal score value
0.0
Average score
-3.868
Total score value
-108.305

The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan3D score mutation
residue index residue name chain Aggrescan3D score
mutation
1 G A 0.0000
2 H A -4.2844
3 K A -4.9532
4 G A -4.4445
5 H A -4.7145
6 K A -4.1657
7 G A -2.2852
1 G B -3.9705
2 H B -4.7566
3 K B -5.3108
4 G B 0.0000
5 H B -4.9057
6 K B -4.9743
7 G B -3.5870
1 G C -2.4015
2 H C -4.6031
3 K C -5.4894
4 G C -4.8550
5 H C -4.8486
6 K C -4.3370
7 G C -2.4495
1 G D -3.7182
2 H D -4.2533
3 K D -4.7805
4 G D -3.9198
5 H D -4.3319
6 K D -3.6261
7 G D -2.3387
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Laboratory of Theory of Biopolymers 2018