| Chain sequence(s) |
A: EVQLVEQSPGNVQPGASLKLSCAASGFTFNKYAMNWVRQAPGKGLEWVARIRSKYQNYATYYADSVKDRFTISRDDSKNTAYLQMNNLKTEDTATYYCVRHGNFGNSYISYWAYWGQGTNVTVSSGGGSGGGSGGGSQTVVTQEPSLTVSPGATVTLTCGSSTGAVTSGYYPNWVQQKPGQAPRGLIGGTKFLAPGTPARFSGSLLGGKAALTLSGVQPEDEAEYYCALWYSNRWVFGGGTKLTVK
input PDB |
| Selected Chain(s) | A |
| Distance of aggregation | 10 Å |
| FoldX usage | Yes |
| Dynamic mode | No |
| Automated mutations | No |
| Downloads | Download all the data |
| Simulation log |
[INFO] Logger: Verbosity set to: 2 - [INFO] (00:00:00)
[WARNING] runJob: Working directory already exists (possibly overwriting previous results -ow
to prevent this behavior) (00:00:00)
[INFO] runJob: Starting aggrescan3d job on: input.pdb with A chain(s) selected (00:00:00)
[INFO] runJob: Creating pdb object from: input.pdb (00:00:00)
[INFO] FoldX: Starting FoldX energy minimalization (00:00:00)
[INFO] Analysis: Starting Aggrescan3D on folded.pdb (00:02:32)
[INFO] Main: Simulation completed successfully. (00:02:33)
|
The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.
| residue index | residue name | chain | Aggrescan3D score | mutation |
|---|---|---|---|---|
| residue index | residue name | chain | Aggrescan3D score | |
| 1 | E | A | -2.0209 | |
| 2 | V | A | -1.0422 | |
| 3 | Q | A | -1.0981 | |
| 4 | L | A | 0.0000 | |
| 5 | V | A | 0.3869 | |
| 6 | E | A | 0.0000 | |
| 7 | Q | A | -1.5048 | |
| 8 | S | A | -1.6043 | |
| 9 | P | A | -1.2926 | |
| 10 | G | A | -1.4571 | |
| 11 | N | A | -1.7842 | |
| 12 | V | A | -1.3831 | |
| 13 | Q | A | -2.0812 | |
| 14 | P | A | -2.0242 | |
| 15 | G | A | -1.8424 | |
| 16 | A | A | -1.5146 | |
| 17 | S | A | -1.5470 | |
| 18 | L | A | 0.0000 | |
| 19 | K | A | -1.8777 | |
| 20 | L | A | 0.0000 | |
| 21 | S | A | -0.5362 | |
| 22 | C | A | 0.0000 | |
| 23 | A | A | -0.3620 | |
| 24 | A | A | 0.0000 | |
| 25 | S | A | -0.9896 | |
| 26 | G | A | -1.1664 | |
| 27 | F | A | -0.7072 | |
| 28 | T | A | -0.7222 | |
| 29 | F | A | 0.0000 | |
| 30 | N | A | -1.9162 | |
| 31 | K | A | -2.0393 | |
| 32 | Y | A | -0.9562 | |
| 33 | A | A | 0.0000 | |
| 34 | M | A | 0.0000 | |
| 35 | N | A | 0.0000 | |
| 36 | W | A | 0.0000 | |
| 37 | V | A | 0.0000 | |
| 38 | R | A | 0.0000 | |
| 39 | Q | A | -1.0991 | |
| 40 | A | A | -1.4681 | |
| 41 | P | A | -1.2495 | |
| 42 | G | A | -1.4518 | |
| 43 | K | A | -2.2642 | |
| 44 | G | A | -1.4490 | |
| 45 | L | A | 0.0000 | |
| 46 | E | A | -0.9255 | |
| 47 | W | A | 0.0000 | |
| 48 | V | A | 0.0000 | |
| 49 | A | A | 0.0000 | |
| 50 | R | A | -0.3529 | |
| 51 | I | A | 0.0000 | |
| 52 | R | A | -1.0760 | |
| 53 | S | A | 0.0000 | |
| 54 | K | A | -2.0326 | |
| 55 | Y | A | -0.3300 | |
| 56 | Q | A | -0.9045 | |
| 57 | N | A | -1.4881 | |
| 58 | Y | A | -0.8780 | |
| 59 | A | A | -0.5136 | |
| 60 | T | A | -0.2644 | |
| 61 | Y | A | -0.5374 | |
| 62 | Y | A | -1.1819 | |
| 63 | A | A | -1.6725 | |
| 64 | D | A | -2.7300 | |
| 65 | S | A | -1.9255 | |
| 66 | V | A | 0.0000 | |
| 67 | K | A | -2.8799 | |
| 68 | D | A | -3.0384 | |
| 69 | R | A | -2.3451 | |
| 70 | F | A | 0.0000 | |
| 71 | T | A | -0.8928 | |
| 72 | I | A | 0.0000 | |
| 73 | S | A | -0.2732 | |
| 74 | R | A | -1.0503 | |
| 75 | D | A | -1.4760 | |
| 76 | D | A | -2.1051 | |
| 77 | S | A | -1.5995 | |
| 78 | K | A | -2.3850 | |
| 79 | N | A | -1.7565 | |
| 80 | T | A | 0.0000 | |
| 81 | A | A | 0.0000 | |
| 82 | Y | A | -0.3108 | |
| 83 | L | A | 0.0000 | |
| 84 | Q | A | -0.9877 | |
| 85 | M | A | 0.0000 | |
| 86 | N | A | -2.1126 | |
| 87 | N | A | -2.5347 | |
| 88 | L | A | 0.0000 | |
| 89 | K | A | -2.6947 | |
| 90 | T | A | -2.0831 | |
| 91 | E | A | -2.5507 | |
| 92 | D | A | 0.0000 | |
| 93 | T | A | -1.3270 | |
| 94 | A | A | 0.0000 | |
| 95 | T | A | -0.7947 | |
| 96 | Y | A | 0.0000 | |
| 97 | Y | A | 0.0000 | |
| 98 | C | A | 0.0000 | |
| 99 | V | A | 0.0000 | |
| 100 | R | A | 0.0000 | |
| 101 | H | A | 0.0000 | |
| 102 | G | A | 0.0000 | |
| 103 | N | A | -0.2463 | |
| 104 | F | A | 0.2182 | |
| 105 | G | A | -0.7488 | |
| 106 | N | A | -1.1785 | |
| 107 | S | A | -0.1369 | |
| 108 | Y | A | 1.0178 | |
| 109 | I | A | 0.5806 | |
| 110 | S | A | 0.0000 | |
| 111 | Y | A | 0.0000 | |
| 112 | W | A | 0.0000 | |
| 113 | A | A | -0.0870 | |
| 114 | Y | A | -0.0739 | |
| 115 | W | A | -0.1826 | |
| 116 | G | A | 0.0000 | |
| 117 | Q | A | -1.4072 | |
| 118 | G | A | 0.0000 | |
| 119 | T | A | -1.1326 | |
| 120 | N | A | -1.7501 | |
| 121 | V | A | 0.0000 | |
| 122 | T | A | -1.4388 | |
| 123 | V | A | 0.0000 | |
| 124 | S | A | -1.5385 | |
| 125 | S | A | -1.3663 | |
| 126 | G | A | -1.1363 | |
| 127 | G | A | -1.0821 | |
| 128 | G | A | -1.1285 | |
| 129 | S | A | -0.9931 | |
| 130 | G | A | -1.3538 | |
| 131 | G | A | -1.4047 | |
| 132 | G | A | -1.4037 | |
| 133 | S | A | -1.0041 | |
| 134 | G | A | -1.2548 | |
| 135 | G | A | -1.2825 | |
| 136 | G | A | -1.3102 | |
| 137 | S | A | -1.0638 | |
| 138 | Q | A | -1.5096 | |
| 139 | T | A | -0.2652 | |
| 140 | V | A | 0.4873 | |
| 141 | V | A | 0.0000 | |
| 142 | T | A | -0.2662 | |
| 143 | Q | A | -0.7511 | |
| 144 | E | A | -0.9528 | |
| 145 | P | A | -1.0386 | |
| 146 | S | A | -0.9262 | |
| 147 | L | A | -0.1772 | |
| 148 | T | A | -0.5416 | |
| 149 | V | A | -0.5750 | |
| 150 | S | A | -1.0586 | |
| 151 | P | A | -1.3096 | |
| 152 | G | A | -0.8286 | |
| 153 | A | A | -0.4633 | |
| 154 | T | A | -0.3463 | |
| 155 | V | A | 0.0000 | |
| 156 | T | A | 0.0735 | |
| 157 | L | A | 0.0000 | |
| 158 | T | A | 0.0000 | |
| 159 | C | A | 0.0000 | |
| 160 | G | A | -0.3924 | |
| 161 | S | A | -0.1887 | |
| 162 | S | A | -0.2541 | |
| 163 | T | A | -0.3288 | |
| 164 | G | A | -0.6239 | |
| 165 | A | A | -0.3385 | |
| 166 | V | A | 0.0000 | |
| 167 | T | A | -0.1016 | |
| 168 | S | A | -0.2912 | |
| 169 | G | A | -0.3219 | |
| 170 | Y | A | 0.1474 | |
| 171 | Y | A | 0.3011 | |
| 172 | P | A | 0.0000 | |
| 173 | N | A | 0.0000 | |
| 174 | W | A | 0.0000 | |
| 175 | V | A | 0.0000 | |
| 176 | Q | A | 0.0000 | |
| 177 | Q | A | -1.4206 | |
| 178 | K | A | -2.0341 | |
| 179 | P | A | -1.3242 | |
| 180 | G | A | -1.3337 | |
| 181 | Q | A | -2.0499 | |
| 182 | A | A | -1.4364 | |
| 183 | P | A | 0.0000 | |
| 184 | R | A | -1.1794 | |
| 185 | G | A | 0.0000 | |
| 186 | L | A | 0.0000 | |
| 187 | I | A | 0.0000 | |
| 188 | G | A | 0.0000 | |
| 189 | G | A | 0.0000 | |
| 190 | T | A | 0.0000 | |
| 191 | K | A | -1.2321 | |
| 192 | F | A | 0.0850 | |
| 193 | L | A | 0.2961 | |
| 194 | A | A | 0.0000 | |
| 195 | P | A | -0.2487 | |
| 196 | G | A | -0.6119 | |
| 197 | T | A | -0.3085 | |
| 198 | P | A | -0.2864 | |
| 199 | A | A | -0.1924 | |
| 200 | R | A | -0.5198 | |
| 201 | F | A | 0.0000 | |
| 202 | S | A | -0.5484 | |
| 203 | G | A | -0.4410 | |
| 204 | S | A | -0.1652 | |
| 205 | L | A | 0.5706 | |
| 206 | L | A | 1.0641 | |
| 207 | G | A | 0.0030 | |
| 208 | G | A | -0.2807 | |
| 209 | K | A | -0.4899 | |
| 210 | A | A | 0.0000 | |
| 211 | A | A | 0.0000 | |
| 212 | L | A | 0.0000 | |
| 213 | T | A | -0.2561 | |
| 214 | L | A | 0.0000 | |
| 215 | S | A | -0.5521 | |
| 216 | G | A | -0.6946 | |
| 217 | V | A | 0.0000 | |
| 218 | Q | A | -1.7962 | |
| 219 | P | A | -2.0317 | |
| 220 | E | A | -2.4878 | |
| 221 | D | A | 0.0000 | |
| 222 | E | A | -2.2807 | |
| 223 | A | A | 0.0000 | |
| 224 | E | A | -1.3892 | |
| 225 | Y | A | 0.0000 | |
| 226 | Y | A | 0.0000 | |
| 227 | C | A | 0.0000 | |
| 228 | A | A | 0.0000 | |
| 229 | L | A | 0.0000 | |
| 230 | W | A | -0.1558 | |
| 231 | Y | A | 0.0000 | |
| 232 | S | A | -0.9190 | |
| 233 | N | A | -1.4476 | |
| 234 | R | A | -1.2748 | |
| 235 | W | A | 0.0000 | |
| 236 | V | A | -0.0070 | |
| 237 | F | A | 0.0000 | |
| 238 | G | A | 0.0000 | |
| 239 | G | A | -1.0893 | |
| 240 | G | A | 0.0000 | |
| 241 | T | A | 0.0000 | |
| 242 | K | A | -1.9299 | |
| 243 | L | A | 0.0000 | |
| 244 | T | A | -1.2932 | |
| 245 | V | A | 0.0000 | |
| 246 | K | A | -1.9846 |