| Chain sequence(s) |
B: RAFMDELMARLAKLEAVLAKLEELLSPETAAKVKAKFAEIKAKVEEIMAA
input PDB |
| Selected Chain(s) | B |
| Distance of aggregation | 10 Å |
| FoldX usage | Yes |
| Dynamic mode | No |
| Automated mutations | No |
| Downloads | Download all the data |
| Simulation log |
[INFO] Logger: Verbosity set to: 2 - [INFO] (00:00:00)
[WARNING] runJob: Working directory already exists (possibly overwriting previous results -ow
to prevent this behavior) (00:00:00)
[INFO] runJob: Starting aggrescan3d job on: input.pdb with B chain(s) selected (00:00:00)
[INFO] runJob: Creating pdb object from: input.pdb (00:00:00)
[INFO] FoldX: Starting FoldX energy minimalization (00:00:00)
[INFO] Analysis: Starting Aggrescan3D on folded.pdb (00:01:45)
[INFO] Main: Simulation completed successfully. (00:01:45)
|
The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.
| residue index | residue name | chain | Aggrescan3D score | mutation |
|---|---|---|---|---|
| residue index | residue name | chain | Aggrescan3D score | |
| 1 | R | B | -1.7338 | |
| 2 | A | B | -0.7205 | |
| 3 | F | B | 0.5309 | |
| 4 | M | B | -0.8602 | |
| 5 | D | B | -2.2857 | |
| 6 | E | B | -1.9321 | |
| 7 | L | B | -1.3658 | |
| 8 | M | B | -1.3860 | |
| 9 | A | B | -1.8260 | |
| 10 | R | B | -2.7973 | |
| 11 | L | B | 0.0000 | |
| 12 | A | B | -1.3741 | |
| 13 | K | B | -1.8571 | |
| 14 | L | B | -0.6571 | |
| 15 | E | B | -1.2950 | |
| 16 | A | B | -0.6877 | |
| 17 | V | B | 0.5187 | |
| 18 | L | B | -0.3457 | |
| 19 | A | B | -1.1116 | |
| 20 | K | B | -1.4737 | |
| 21 | L | B | -0.3758 | |
| 22 | E | B | -1.8696 | |
| 23 | E | B | -1.9494 | |
| 24 | L | B | 0.2521 | |
| 25 | L | B | -0.2326 | |
| 26 | S | B | -0.9586 | |
| 27 | P | B | -1.6203 | |
| 28 | E | B | -2.5337 | |
| 29 | T | B | -1.5065 | |
| 30 | A | B | 0.0000 | |
| 31 | A | B | -2.0807 | |
| 32 | K | B | -2.7433 | |
| 33 | V | B | -1.9737 | |
| 34 | K | B | -2.4721 | |
| 35 | A | B | -2.0908 | |
| 36 | K | B | -2.8163 | |
| 37 | F | B | 0.0000 | |
| 38 | A | B | -2.0575 | |
| 39 | E | B | -2.9138 | |
| 40 | I | B | -2.0062 | |
| 41 | K | B | -2.1122 | |
| 42 | A | B | -2.4590 | |
| 43 | K | B | -2.8587 | |
| 44 | V | B | 0.0000 | |
| 45 | E | B | -2.6845 | |
| 46 | E | B | -2.4858 | |
| 47 | I | B | -0.4697 | |
| 48 | M | B | -1.0433 | |
| 49 | A | B | -0.7054 | |
| 50 | A | B | -0.1495 |