| Chain sequence(s) |
A: RGDGWKPFVIGAEVLGHLYTEIGGIKLVFF
input PDB |
| Selected Chain(s) | A |
| Distance of aggregation | 5 Å |
| FoldX usage | No |
| Dynamic mode | No |
| Automated mutations | No |
| Downloads | Download all the data |
| Simulation log |
[INFO] Logger: Verbosity set to: 2 - [INFO] (00:00:01)
[WARNING] runJob: Working directory already exists (possibly overwriting previous results -ow
to prevent this behavior) (00:00:01)
[INFO] runJob: Starting aggrescan3d job on: input.pdb with A chain(s) selected (00:00:01)
[INFO] runJob: Creating pdb object from: input.pdb (00:00:01)
[INFO] runJob: FoldX not utilized. Treating input pdb file as it was already optimized. (00:00:01)
[INFO] Analysis: Starting Aggrescan3D on folded.pdb (00:00:01)
[INFO] Main: Simulation completed successfully. (00:00:01)
|
The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.
| residue index | residue name | chain | Aggrescan3D score | mutation |
|---|---|---|---|---|
| residue index | residue name | chain | Aggrescan3D score | |
| 1 | R | A | -1.9343 | |
| 2 | G | A | -0.9830 | |
| 3 | D | A | -1.0715 | |
| 4 | G | A | -0.4069 | |
| 5 | W | A | 0.8503 | |
| 6 | K | A | -1.2367 | |
| 7 | P | A | -0.1544 | |
| 8 | F | A | 2.0546 | |
| 9 | V | A | 1.7092 | |
| 10 | I | A | 2.1547 | |
| 11 | G | A | 0.3884 | |
| 12 | A | A | -0.3208 | |
| 13 | E | A | -1.5357 | |
| 14 | V | A | 1.4935 | |
| 15 | L | A | 1.9117 | |
| 16 | G | A | -0.1413 | |
| 17 | H | A | -0.8016 | |
| 18 | L | A | 1.2759 | |
| 19 | Y | A | 1.5046 | |
| 20 | T | A | -0.2962 | |
| 21 | E | A | -1.4606 | |
| 22 | I | A | 1.5998 | |
| 23 | G | A | -0.2038 | |
| 24 | G | A | -0.1973 | |
| 25 | I | A | 1.6361 | |
| 26 | K | A | -1.0911 | |
| 27 | L | A | 1.5519 | |
| 28 | V | A | 2.3720 | |
| 29 | F | A | 2.5521 | |
| 30 | F | A | 2.2385 |