Project name: Pep2-Mut5-KLVFF

Status: done

Started: 2026-02-08 16:22:22
Settings
Chain sequence(s) A: RGDGWKPFVIGAEVLGHLYTEIGGIKLVFF
input PDB
Selected Chain(s) A
Distance of aggregation 5 Å
FoldX usage No
Dynamic mode No
Automated mutations No
Downloads Download all the data
Simulation log
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:01)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:01)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with A chain(s) selected             (00:00:01)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:01)
[INFO]       runJob:   FoldX not utilized. Treating input pdb file as it was already optimized.    (00:00:01)
[INFO]       Analysis: Starting Aggrescan3D on folded.pdb                                          (00:00:01)
[INFO]       Main:     Simulation completed successfully.                                          (00:00:01)
Show buried residues

Minimal score value
-1.9343
Maximal score value
2.5521
Average score
0.4486
Total score value
13.4581

The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan3D score mutation
residue index residue name chain Aggrescan3D score
mutation
1 R A -1.9343
2 G A -0.9830
3 D A -1.0715
4 G A -0.4069
5 W A 0.8503
6 K A -1.2367
7 P A -0.1544
8 F A 2.0546
9 V A 1.7092
10 I A 2.1547
11 G A 0.3884
12 A A -0.3208
13 E A -1.5357
14 V A 1.4935
15 L A 1.9117
16 G A -0.1413
17 H A -0.8016
18 L A 1.2759
19 Y A 1.5046
20 T A -0.2962
21 E A -1.4606
22 I A 1.5998
23 G A -0.2038
24 G A -0.1973
25 I A 1.6361
26 K A -1.0911
27 L A 1.5519
28 V A 2.3720
29 F A 2.5521
30 F A 2.2385
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Laboratory of Theory of Biopolymers 2018