Project name: 5G8

Status: done

Started: 2024-12-28 01:04:26
Settings
Chain sequence(s) A: MGQWVEQTPTTTTKEAGESLTINCVLRDSSCPLASTYWYFTKKGATKKESLSNGGRYAETVNKASKSFSLRISDLRVEDSGTYHCKAVNSWTNCAPLERYYEGGGTILSVKP
input PDB
Selected Chain(s) A
Distance of aggregation 10 Å
FoldX usage Yes
Dynamic mode No
Automated mutations No
Downloads Download all the data
Simulation log
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:00)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:00)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with A chain(s) selected             (00:00:00)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:00)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:00:00)
[INFO]       Analysis: Starting Aggrescan3D on folded.pdb                                          (00:01:04)
[INFO]       Main:     Simulation completed successfully.                                          (00:01:05)
Show buried residues

Minimal score value
-3.1394
Maximal score value
0.5702
Average score
-0.9267
Total score value
-103.7866

The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan3D score mutation
residue index residue name chain Aggrescan3D score
mutation
1 M A 0.3232
2 G A -0.7111
3 Q A -1.6208
4 W A -0.9390
5 V A 0.0000
6 E A -1.2274
7 Q A -0.9701
8 T A -0.6093
9 P A -0.3243
10 T A -0.1547
11 T A 0.1580
12 T A 0.0117
13 T A -0.7766
14 K A -1.8809
15 E A -3.1394
16 A A -2.5925
17 G A -2.4332
18 E A -2.5313
19 S A -1.9715
20 L A 0.0000
21 T A -1.0569
22 I A 0.0000
23 N A -1.0593
24 C A 0.0000
25 V A -0.8845
26 L A 0.0000
27 R A -2.0140
28 D A -2.3457
29 S A -1.5181
30 S A -0.9392
31 C A 0.0000
32 P A -0.3412
33 L A 0.0000
34 A A -0.5392
35 S A -0.1465
36 T A 0.1562
37 Y A 0.2342
38 W A 0.0000
39 Y A -0.7381
40 F A 0.0000
41 T A -2.2534
42 K A -2.8918
43 K A -2.5710
44 G A -1.7361
45 A A -1.8161
46 T A -1.9009
47 K A -2.9773
48 K A -3.0718
49 E A -2.6466
50 S A -0.9427
51 L A -0.5965
52 S A -1.0327
53 N A -1.9129
54 G A -1.4492
55 G A -1.3756
56 R A -1.8260
57 Y A -1.6751
58 A A -1.5572
59 E A -1.1782
60 T A -0.7963
61 V A -0.3329
62 N A -1.3496
63 K A -1.6078
64 A A -0.9232
65 S A -0.9307
66 K A -1.1113
67 S A -0.9131
68 F A 0.0000
69 S A -0.8787
70 L A 0.0000
71 R A -2.2527
72 I A 0.0000
73 S A -2.0708
74 D A -2.9120
75 L A 0.0000
76 R A -2.4470
77 V A -1.0865
78 E A -2.2697
79 D A 0.0000
80 S A -1.4419
81 G A 0.0000
82 T A -0.5936
83 Y A 0.0000
84 H A -0.6948
85 C A 0.0000
86 K A -0.4730
87 A A 0.0000
88 V A 0.0000
89 N A 0.0000
90 S A -0.1748
91 W A 0.5702
92 T A -0.0221
93 N A -0.7663
94 C A 0.0446
95 A A -0.1756
96 P A 0.0390
97 L A 0.5440
98 E A -1.2132
99 R A -1.7838
100 Y A -0.7059
101 Y A 0.0000
102 E A -1.3527
103 G A 0.0000
104 G A -0.9034
105 G A 0.0000
106 T A 0.0000
107 I A 0.3265
108 L A 0.0000
109 S A -1.0447
110 V A 0.0000
111 K A -2.5131
112 P A -1.5771
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Laboratory of Theory of Biopolymers 2018