Project name: 1R24

Status: done

Started: 2026-03-30 04:28:35
Settings
Chain sequence(s) H: DVQLVESGGGLVQPGGSRKLSCAASGFTFSNFGMHWVRQAPEKGLEWVAYISSGGSSINYADTVKGRFTISRDNPKNTLFLQMTSLRSEDTAIYYCTRGGTGTRSLYYFDYWGQGATLIVSS
L: DIQMTQITSSLSVSLGDRVIISCRASQDIGNFLNWYQQKPDGSLKLLIYYTSRLQSGVPSRFSGWGSGTDYSLTISNLEEEDIATFFCQQGKTLPYTFGGGTKLEIK
input PDB
Selected Chain(s) H,L
Distance of aggregation 10 Å
FoldX usage Yes
Dynamic mode No
Automated mutations No
Downloads Download all the data
Simulation log
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:00)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:00)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with all chain(s) selected           (00:00:00)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:00)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:00:00)
[INFO]       Analysis: Starting Aggrescan3D on folded.pdb                                          (00:01:04)
[INFO]       Main:     Simulation completed successfully.                                          (00:01:05)
Show buried residues

Minimal score value
-3.0966
Maximal score value
1.5377
Average score
-0.5957
Total score value
-136.4234

The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan3D score mutation
residue index residue name chain Aggrescan3D score
mutation
1 D H -2.0677
2 V H -1.2070
3 Q H -1.1816
4 L H 0.0000
5 V H 1.1548
6 E H 0.0000
7 S H -0.2211
8 G H -0.7085
9 G H -0.1468
11 G H 0.6473
12 L H 1.3078
13 V H 0.0000
14 Q H -1.3725
15 P H -1.5122
16 G H -1.3750
17 G H -1.1930
18 S H -1.4390
19 R H -1.5185
20 K H -1.9936
21 L H 0.0000
22 S H -0.2386
23 C H 0.0000
24 A H 0.0222
25 A H 0.0000
26 S H -0.7143
27 G H -1.1934
28 F H -0.6299
29 T H -0.4845
30 F H 0.0000
35 S H -1.2569
36 N H -1.3432
37 F H -0.4863
38 G H -0.2380
39 M H 0.0000
40 H H 0.0000
41 W H 0.0000
42 V H 0.0000
43 R H 0.0000
44 Q H -0.8944
45 A H -1.5139
46 P H -1.5651
47 E H -2.8503
48 K H -2.9153
49 G H -1.6749
50 L H 0.0000
51 E H -0.9022
52 W H 0.0000
53 V H 0.0000
54 A H 0.0000
55 Y H 0.0000
56 I H 0.0000
57 S H -0.3591
58 S H -0.7560
59 G H -0.8959
62 G H -0.4679
63 S H -0.3056
64 S H -0.0398
65 I H 0.6036
66 N H -0.1862
67 Y H -0.7722
68 A H 0.0000
69 D H -2.5268
70 T H -1.7011
71 V H 0.0000
72 K H -2.6537
74 G H -1.6587
75 R H -1.3983
76 F H 0.0000
77 T H -0.8534
78 I H 0.0000
79 S H -0.2966
80 R H -0.9238
81 D H -1.4345
82 N H -1.7327
83 P H -1.5238
84 K H -2.3179
85 N H -1.6369
86 T H -0.8568
87 L H 0.0000
88 F H -0.4022
89 L H 0.0000
90 Q H -1.7749
91 M H 0.0000
92 T H -1.1629
93 S H -1.0930
94 L H 0.0000
95 R H -2.2838
96 S H -1.8511
97 E H -2.2752
98 D H 0.0000
99 T H -0.3711
100 A H 0.0000
101 I H 0.4997
102 Y H 0.0000
103 Y H 0.0000
104 C H 0.0000
105 T H 0.0000
106 R H 0.0000
107 G H -0.0582
108 G H 0.0000
109 T H -0.7128
110 G H -0.7091
111 T H -0.9295
111A R H -1.9675
112A S H -1.2374
112 L H 0.0000
113 Y H -0.1411
114 Y H 0.0000
115 F H 0.0000
116 D H -0.1572
117 Y H 0.0050
118 W H 0.0000
119 G H 0.0000
120 Q H -1.1131
121 G H 0.0000
122 A H 0.0000
123 T H 0.3707
124 L H 0.0000
125 I H 0.7185
126 V H 0.0000
127 S H -0.6663
128 S H -0.5325
1 D L -2.1343
2 I L 0.0000
3 Q L -2.2052
4 M L 0.0000
5 T L -0.5913
6 Q L 0.1094
7 I L 1.5216
8 T L 0.6283
9 S L -0.0905
10 S L -0.4754
11 L L -0.1026
12 S L -0.6398
13 V L 0.0000
14 S L -0.8420
15 L L -0.5221
16 G L -1.5041
17 D L -1.7186
18 R L -1.9779
19 V L 0.0000
20 I L 1.5377
21 I L 0.0000
22 S L 0.3802
23 C L 0.0000
24 R L -2.1712
25 A L 0.0000
26 S L -2.1756
27 Q L -3.0678
28 D L -3.0966
29 I L 0.0000
36 G L -1.4553
37 N L -0.8507
38 F L -0.5499
39 L L 0.0000
40 N L 0.0000
41 W L 0.0000
42 Y L 0.0000
43 Q L 0.0000
44 Q L 0.0000
45 K L -1.4199
46 P L -1.3097
47 D L -2.2214
48 G L -1.4274
49 S L -1.3393
50 L L 0.0000
51 K L -0.8362
52 L L 0.0000
53 L L 0.0000
54 I L 0.0000
55 Y L 0.0298
56 Y L 0.0357
57 T L 0.0000
65 S L -0.1099
66 R L -0.7043
67 L L -0.1748
68 Q L -0.4477
69 S L -0.4735
70 G L -0.4655
71 V L -0.2082
72 P L -0.2766
74 S L -0.3242
75 R L -0.9940
76 F L 0.0000
77 S L 0.2006
78 G L 0.0000
79 W L 0.6963
80 G L -0.3366
83 S L -0.9790
84 G L -1.7573
85 T L -2.1526
86 D L -1.9072
87 Y L 0.0000
88 S L 0.2913
89 L L 0.0000
90 T L 0.0000
91 I L 0.0000
92 S L -1.3875
93 N L -2.1691
94 L L 0.0000
95 E L -2.6530
96 E L -2.8566
97 E L -2.9835
98 D L 0.0000
99 I L -1.1391
100 A L 0.0000
101 T L -0.6116
102 F L 0.0000
103 F L 0.0000
104 C L 0.0000
105 Q L 0.0000
106 Q L 0.0000
107 G L 0.0000
108 K L -1.7253
109 T L -0.6542
114 L L 0.0193
115 P L -0.6556
116 Y L 0.0000
117 T L -0.8577
118 F L 0.0000
119 G L 0.0000
120 G L -1.1131
121 G L 0.0000
122 T L 0.0000
123 K L -1.1262
124 L L 0.0000
125 E L -1.0413
126 I L 0.4182
127 K L -1.0371
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Laboratory of Theory of Biopolymers 2018