Project name: query_structure

Status: done

Started: 2026-03-16 22:52:03
Settings
Chain sequence(s) A: AACSDRAHGHICESFKSFCKDSGRNGVKLRANCKKTCGLC
input PDB
Selected Chain(s) A
Distance of aggregation 10 Å
FoldX usage Yes
Dynamic mode No
Automated mutations No
Downloads Download all the data
Simulation log
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:01)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:01)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with A chain(s) selected             (00:00:01)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:01)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:00:01)
[INFO]       Analysis: Starting Aggrescan3D on folded.pdb                                          (00:01:29)
[INFO]       Main:     Simulation completed successfully.                                          (00:01:29)
Show buried residues

Minimal score value
-2.8479
Maximal score value
0.4725
Average score
-1.2634
Total score value
-50.5345

The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan3D score mutation
residue index residue name chain Aggrescan3D score
mutation
1 A A 0.2052
2 A A 0.0519
3 C A -0.4581
4 S A -1.4444
5 D A -2.4850
6 R A -2.8479
7 A A -2.3135
8 H A -1.8522
9 G A -2.0286
10 H A -1.8286
11 I A -1.3817
12 C A 0.0000
13 E A -2.3167
14 S A -1.1361
15 F A -0.6365
16 K A -1.9911
17 S A -0.9043
18 F A -0.3641
19 C A 0.0000
20 K A -1.8047
21 D A -1.7068
22 S A -1.0573
23 G A -1.5024
24 R A -2.2401
25 N A -1.8858
26 G A 0.0000
27 V A -0.5461
28 K A -1.6454
29 L A 0.0000
30 R A -1.9713
31 A A -1.5823
32 N A -2.3682
33 C A 0.0000
34 K A -2.1895
35 K A -2.4141
36 T A -1.9171
37 C A -1.6847
38 G A -0.8357
39 L A 0.0762
40 C A 0.4725
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Laboratory of Theory of Biopolymers 2018