| Chain sequence(s) |
A: FFKGHFF
C: FFKGHFF B: FFKGHFF E: FFKGHFF D: FFKGHFF G: FFKGHFF F: FFKGHFF I: FFKGHFF H: FFKGHFF K: FFKGHFF J: FFKGHFF L: FFKGHFF input PDB |
| Selected Chain(s) | A,C,B,E,D,G,F,I,H,K,J,L |
| Distance of aggregation | 10 Å |
| FoldX usage | Yes |
| Dynamic mode | No |
| Automated mutations | No |
| Downloads | Download all the data |
| Simulation log |
[INFO] Logger: Verbosity set to: 2 - [INFO] (00:00:00)
[WARNING] runJob: Working directory already exists (possibly overwriting previous results -ow
to prevent this behavior) (00:00:00)
[INFO] runJob: Starting aggrescan3d job on: input.pdb with all chain(s) selected (00:00:00)
[INFO] runJob: Creating pdb object from: input.pdb (00:00:00)
[INFO] FoldX: Starting FoldX energy minimalization (00:00:01)
[INFO] Analysis: Starting Aggrescan3D on folded.pdb (00:03:24)
[INFO] Main: Simulation completed successfully. (00:03:28)
|
The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.
| residue index | residue name | chain | Aggrescan3D score | mutation |
|---|---|---|---|---|
| residue index | residue name | chain | Aggrescan3D score | |
| 1 | F | A | 1.5595 | |
| 2 | F | A | 0.5584 | |
| 3 | K | A | -0.4913 | |
| 4 | G | A | 0.0000 | |
| 5 | H | A | 1.0311 | |
| 6 | F | A | 3.7655 | |
| 7 | F | A | 3.5923 | |
| 1 | F | B | 1.8556 | |
| 2 | F | B | 0.9011 | |
| 3 | K | B | -0.5090 | |
| 4 | G | B | 0.0000 | |
| 5 | H | B | 1.4933 | |
| 6 | F | B | 3.8349 | |
| 7 | F | B | 4.0594 | |
| 1 | F | C | 2.8342 | |
| 2 | F | C | 1.9668 | |
| 3 | K | C | -0.5941 | |
| 4 | G | C | -0.1007 | |
| 5 | H | C | 0.8591 | |
| 6 | F | C | 3.3331 | |
| 7 | F | C | 3.5010 | |
| 1 | F | D | 1.7803 | |
| 2 | F | D | 0.7042 | |
| 3 | K | D | -0.3290 | |
| 4 | G | D | 0.0000 | |
| 5 | H | D | 1.5725 | |
| 6 | F | D | 3.5455 | |
| 7 | F | D | 3.4549 | |
| 1 | F | E | 1.5972 | |
| 2 | F | E | 0.6314 | |
| 3 | K | E | -0.5027 | |
| 4 | G | E | 0.0000 | |
| 5 | H | E | 0.9737 | |
| 6 | F | E | 3.4238 | |
| 7 | F | E | 3.4731 | |
| 1 | F | F | 1.6314 | |
| 2 | F | F | 0.8348 | |
| 3 | K | F | 0.0237 | |
| 4 | G | F | 0.0000 | |
| 5 | H | F | 1.6172 | |
| 6 | F | F | 3.6203 | |
| 7 | F | F | 3.4379 | |
| 1 | F | G | 2.3077 | |
| 2 | F | G | 1.5059 | |
| 3 | K | G | 0.1699 | |
| 4 | G | G | 0.0000 | |
| 5 | H | G | 1.5058 | |
| 6 | F | G | 3.6511 | |
| 7 | F | G | 3.9100 | |
| 1 | F | H | 1.8779 | |
| 2 | F | H | 0.9360 | |
| 3 | K | H | -0.2734 | |
| 4 | G | H | 0.0000 | |
| 5 | H | H | 1.9588 | |
| 6 | F | H | 4.0611 | |
| 7 | F | H | 4.0087 | |
| 1 | F | I | 2.0398 | |
| 2 | F | I | 0.7137 | |
| 3 | K | I | -0.4869 | |
| 4 | G | I | 0.0000 | |
| 5 | H | I | 1.4715 | |
| 6 | F | I | 3.5692 | |
| 7 | F | I | 3.3802 | |
| 1 | F | J | 1.6675 | |
| 2 | F | J | 0.3383 | |
| 3 | K | J | -0.6906 | |
| 4 | G | J | 0.0000 | |
| 5 | H | J | 2.1591 | |
| 6 | F | J | 3.5824 | |
| 7 | F | J | 3.2951 | |
| 1 | F | K | 2.7320 | |
| 2 | F | K | 1.6044 | |
| 3 | K | K | -0.6650 | |
| 4 | G | K | 0.0000 | |
| 5 | H | K | 1.3344 | |
| 6 | F | K | 3.8407 | |
| 7 | F | K | 4.0743 | |
| 1 | F | L | 3.4379 | |
| 2 | F | L | 3.0982 | |
| 3 | K | L | -0.1776 | |
| 4 | G | L | -0.6169 | |
| 5 | H | L | 0.0623 | |
| 6 | F | L | 2.6346 | |
| 7 | F | L | 3.0824 |