Project name: 5GRJ

Status: done

Started: 2026-03-29 08:22:14
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Chain sequence(s) H: EVQLLESGGGLVQPGGSLRLSCAASGFTFSSYIMMWVRQAPGKGLEWVSSIYPSGGITFYADTVKGRFTISRDNSKNTLYLQMNSLRAEDTAVYYCARIKLGTVTTVDYWGQGTLVTVSS
L: QSALTQPASVSGSPGQSITISCTGTSSDVGGYNYVSWYQQHPGKAPKLMIYDVSNRPSGVSNRFSGSKSGNTASLTISGLQAEDEADYYCSSYTSSSTRVFGTGTKVTVL
input PDB
Selected Chain(s) H,L
Distance of aggregation 10 Å
FoldX usage Yes
Dynamic mode No
Automated mutations No
Downloads Download all the data
Simulation log
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:00)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:00)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with all chain(s) selected           (00:00:00)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:00)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:00:00)
[INFO]       Analysis: Starting Aggrescan3D on folded.pdb                                          (00:00:52)
[INFO]       Main:     Simulation completed successfully.                                          (00:00:53)
Show buried residues

Minimal score value
-2.6579
Maximal score value
1.7184
Average score
-0.4737
Total score value
-108.9427

The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan3D score mutation
residue index residue name chain Aggrescan3D score
mutation
1 E H -1.9364
2 V H -0.8019
3 Q H -0.6646
4 L H 0.0000
5 L H 0.9018
6 E H 0.2173
7 S H -0.1116
8 G H -0.5703
9 G H 0.2332
11 G H 0.8227
12 L H 1.3935
13 V H -0.0540
14 Q H -1.3457
15 P H -1.6640
16 G H -1.5049
17 G H -1.1204
18 S H -1.2073
19 L H -0.6324
20 R H -1.2077
21 L H 0.0000
22 S H -0.2510
23 C H 0.0000
24 A H -0.1290
25 A H 0.0000
26 S H -0.6283
27 G H -1.0401
28 F H -0.4097
29 T H -0.2242
30 F H 0.0000
35 S H -0.7448
36 S H 0.0264
37 Y H 0.3841
38 I H 0.0000
39 M H 0.0000
40 M H 0.0000
41 W H 0.0000
42 V H 0.0000
43 R H 0.0000
44 Q H -0.6103
45 A H -1.0086
46 P H -0.8135
47 G H -1.4786
48 K H -2.1795
49 G H -1.3522
50 L H 0.0000
51 E H -0.9269
52 W H 0.0000
53 V H 0.0000
54 S H 0.0000
55 S H 0.0000
56 I H 0.0000
57 Y H 0.7747
58 P H -0.0117
59 S H -0.2376
62 G H -0.0252
63 G H 0.3225
64 I H 1.7184
65 T H 1.0621
66 F H 0.5338
67 Y H -0.6722
68 A H 0.0000
69 D H -2.6579
70 T H -1.8973
71 V H 0.0000
72 K H -2.5151
74 G H -1.7513
75 R H -1.5300
76 F H 0.0000
77 T H -0.6846
78 I H 0.0000
79 S H -0.0942
80 R H -0.9560
81 D H -1.5533
82 N H -1.7861
83 S H -1.6266
84 K H -2.4215
85 N H -1.8321
86 T H -1.0429
87 L H 0.0000
88 Y H -0.2942
89 L H 0.0000
90 Q H -0.8195
91 M H 0.0000
92 N H -1.5378
93 S H -1.4041
94 L H 0.0000
95 R H -2.3148
96 A H -1.6805
97 E H -2.2171
98 D H 0.0000
99 T H -0.3530
100 A H 0.0000
101 V H 0.7178
102 Y H 0.0000
103 Y H 0.0000
104 C H 0.0000
105 A H 0.0000
106 R H 0.0000
107 I H 0.0000
108 K H 0.3476
109 L H 0.9383
110 G H 0.1902
111 T H 0.0000
112 V H 0.7578
113 T H 0.0000
114 T H 0.0000
115 V H 0.0000
116 D H -0.0057
117 Y H 0.2889
118 W H -0.0945
119 G H 0.0000
120 Q H -1.1578
121 G H 0.0000
122 T H 0.5085
123 L H 1.5207
124 V H 0.0000
125 T H 0.3313
126 V H 0.0000
127 S H -0.7310
128 S H -0.7032
1 Q L -1.7706
2 S L -0.7974
3 A L -0.4886
4 L L 0.0000
5 T L -0.1718
6 Q L 0.0000
7 P L -0.3123
8 A L -0.4503
9 S L -0.7162
11 V L -0.1669
12 S L -0.1023
13 G L 0.0000
14 S L -0.0833
15 P L -0.7747
16 G L -1.4484
17 Q L -1.5854
18 S L -1.0856
19 I L -0.3086
20 T L -0.0563
21 I L 0.0000
22 S L -0.1968
23 C L 0.0000
24 T L -0.4923
25 G L -0.6078
26 T L -0.6633
27 S L -0.8039
28 S L -0.5471
29 D L 0.0000
30 V L 0.0000
31 G L -1.1489
35 G L -0.8363
36 Y L -0.3834
37 N L -1.0531
38 Y L -0.0434
39 V L 0.0000
40 S L 0.0000
41 W L 0.0000
42 Y L 0.0000
43 Q L 0.0000
44 Q L 0.0000
45 H L -1.7220
46 P L -1.3039
47 G L -1.6110
48 K L -2.4674
49 A L -1.4592
50 P L 0.0000
51 K L -1.0240
52 L L -0.3177
53 M L 0.0000
54 I L 0.0000
55 Y L -0.7290
56 D L -0.9389
57 V L -0.7874
65 S L -1.1333
66 N L -1.6319
67 R L -1.6955
68 P L -0.8500
69 S L -0.7163
70 G L -0.7625
71 V L -0.8466
72 S L -0.9873
74 N L -1.6263
75 R L -1.0756
76 F L 0.0000
77 S L -0.8952
78 G L -0.6702
79 S L -0.7826
80 K L -1.0251
83 S L -0.8751
84 G L -1.1848
85 N L -1.3068
86 T L -0.8447
87 A L 0.0000
88 S L -0.3147
89 L L 0.0000
90 T L -0.2270
91 I L 0.0000
92 S L -1.0601
93 G L -1.1649
94 L L 0.0000
95 Q L -1.6576
96 A L -1.1880
97 E L -2.2189
98 D L 0.0000
99 E L -1.6261
100 A L 0.0000
101 D L -1.4239
102 Y L 0.0000
103 Y L 0.0000
104 C L 0.0000
105 S L 0.0000
106 S L 0.0000
107 Y L 0.1458
108 T L 0.0000
109 S L -0.3729
113 S L -0.4189
114 S L -0.0836
115 T L -0.3124
116 R L 0.0000
117 V L 0.0000
118 F L 0.0000
119 G L 0.0000
120 T L -0.4767
121 G L 0.0000
122 T L 0.0000
123 K L -1.7652
124 V L 0.0000
125 T L -0.4880
126 V L 0.0741
127 L L 1.2367
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Laboratory of Theory of Biopolymers 2018