| Chain sequence(s) |
A: MDAMKRGLCCVLLLCGAVFVSPEAAAKAKFVAAWTLKAAAAAYYVKVNIRDIAAYLYIEDLLSRAAYAVYNPALGYAAYRNQAAKGETAAYSSQESLSDLAAYDACLGLLAVAAYYTDASFANRGPGPGRNQAAKGETRCFAKVGPGPGSQESLSDLGAIESLRGPGPGLLLLYIEDLLSRCSSGPGPGLLNYAVYNPALGYSQGPGPGRIKILCATYVKVNIRGPGPGSDACLGLLAVAAVAAGPGPGVYREYTDASFANRKEGPGPGYTDASFANRKERGPEEEIFMYLLTVFLITQMIGSALFAV
input PDB |
| Selected Chain(s) | A |
| Distance of aggregation | 10 Å |
| FoldX usage | Yes |
| Dynamic mode | No |
| Automated mutations | No |
| Downloads | Download all the data |
| Simulation log |
[INFO] Logger: Verbosity set to: 2 - [INFO] (00:00:00)
[WARNING] runJob: Working directory already exists (possibly overwriting previous results -ow
to prevent this behavior) (00:00:00)
[INFO] runJob: Starting aggrescan3d job on: input.pdb with A chain(s) selected (00:00:00)
[INFO] runJob: Creating pdb object from: input.pdb (00:00:00)
[INFO] FoldX: Starting FoldX energy minimalization (00:00:00)
[INFO] Analysis: Starting Aggrescan3D on folded.pdb (00:06:52)
[INFO] Main: Simulation completed successfully. (00:06:54)
|
The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.
| residue index | residue name | chain | Aggrescan3D score | mutation |
|---|---|---|---|---|
| residue index | residue name | chain | Aggrescan3D score | |
| 1 | M | A | 0.0653 | |
| 2 | D | A | -1.0965 | |
| 3 | A | A | -0.0401 | |
| 4 | M | A | 0.2894 | |
| 5 | K | A | -0.7993 | |
| 6 | R | A | -0.0715 | |
| 7 | G | A | 0.9007 | |
| 8 | L | A | 2.1068 | |
| 9 | C | A | 1.7328 | |
| 10 | C | A | 0.0000 | |
| 11 | V | A | 2.5746 | |
| 12 | L | A | 3.1013 | |
| 13 | L | A | 2.3582 | |
| 14 | L | A | 2.3394 | |
| 15 | C | A | 2.5887 | |
| 16 | G | A | 2.2195 | |
| 17 | A | A | 0.0000 | |
| 18 | V | A | 3.3593 | |
| 19 | F | A | 3.2868 | |
| 20 | V | A | 2.0977 | |
| 21 | S | A | 0.3617 | |
| 22 | P | A | -0.5522 | |
| 23 | E | A | -2.1571 | |
| 24 | A | A | -0.9416 | |
| 25 | A | A | 0.0000 | |
| 26 | A | A | -0.8191 | |
| 27 | K | A | -2.0098 | |
| 28 | A | A | -0.2743 | |
| 29 | K | A | 0.0000 | |
| 30 | F | A | 0.0000 | |
| 31 | V | A | 0.3782 | |
| 32 | A | A | 0.0000 | |
| 33 | A | A | 0.1323 | |
| 34 | W | A | 0.5367 | |
| 35 | T | A | 0.2127 | |
| 36 | L | A | 0.0000 | |
| 37 | K | A | -0.8262 | |
| 38 | A | A | -0.2324 | |
| 39 | A | A | 0.0000 | |
| 40 | A | A | 0.0000 | |
| 41 | A | A | 0.2040 | |
| 42 | A | A | 0.1862 | |
| 43 | Y | A | 0.0000 | |
| 44 | Y | A | 0.0000 | |
| 45 | V | A | 0.8466 | |
| 46 | K | A | -0.5900 | |
| 47 | V | A | -0.2824 | |
| 48 | N | A | -0.5198 | |
| 49 | I | A | 0.6828 | |
| 50 | R | A | -1.1746 | |
| 51 | D | A | -0.5981 | |
| 52 | I | A | 0.6605 | |
| 53 | A | A | 0.5835 | |
| 54 | A | A | 0.6384 | |
| 55 | Y | A | 0.0000 | |
| 56 | L | A | 1.5255 | |
| 57 | Y | A | 1.3992 | |
| 58 | I | A | 0.0000 | |
| 59 | E | A | -0.7944 | |
| 60 | D | A | -1.8083 | |
| 61 | L | A | -0.8717 | |
| 62 | L | A | 0.0000 | |
| 63 | S | A | -1.3867 | |
| 64 | R | A | -1.9952 | |
| 65 | A | A | 0.0000 | |
| 66 | A | A | -0.4071 | |
| 67 | Y | A | 0.2322 | |
| 68 | A | A | 0.0000 | |
| 69 | V | A | 0.0000 | |
| 70 | Y | A | 0.6957 | |
| 71 | N | A | 0.5140 | |
| 72 | P | A | 0.5446 | |
| 73 | A | A | 0.6679 | |
| 74 | L | A | 1.5133 | |
| 75 | G | A | 0.1508 | |
| 76 | Y | A | 0.1323 | |
| 77 | A | A | -0.2494 | |
| 78 | A | A | -0.5635 | |
| 79 | Y | A | -0.7845 | |
| 80 | R | A | -1.9529 | |
| 81 | N | A | -2.3843 | |
| 82 | Q | A | -2.0155 | |
| 83 | A | A | -1.4565 | |
| 84 | A | A | -1.6574 | |
| 85 | K | A | -2.6034 | |
| 86 | G | A | -2.1155 | |
| 87 | E | A | -2.6531 | |
| 88 | T | A | -1.1525 | |
| 89 | A | A | -0.3695 | |
| 90 | A | A | -0.3296 | |
| 91 | Y | A | 0.6842 | |
| 92 | S | A | 0.2034 | |
| 93 | S | A | -0.5355 | |
| 94 | Q | A | -1.1984 | |
| 95 | E | A | -1.0113 | |
| 96 | S | A | -0.1278 | |
| 97 | L | A | 0.5625 | |
| 98 | S | A | -0.3001 | |
| 99 | D | A | 0.1452 | |
| 100 | L | A | 0.0000 | |
| 101 | A | A | -0.0610 | |
| 102 | A | A | -0.0492 | |
| 103 | Y | A | 0.0000 | |
| 104 | D | A | 0.0000 | |
| 105 | A | A | 0.0000 | |
| 106 | C | A | 0.0000 | |
| 107 | L | A | 0.0000 | |
| 108 | G | A | 0.0000 | |
| 109 | L | A | 0.0000 | |
| 110 | L | A | 0.0000 | |
| 111 | A | A | 0.0000 | |
| 112 | V | A | 0.0000 | |
| 113 | A | A | 0.0000 | |
| 114 | A | A | 0.0000 | |
| 115 | Y | A | 0.1850 | |
| 116 | Y | A | 0.0000 | |
| 117 | T | A | 0.0000 | |
| 118 | D | A | -0.5525 | |
| 119 | A | A | 0.0000 | |
| 120 | S | A | 0.0000 | |
| 121 | F | A | -1.1684 | |
| 122 | A | A | -2.0344 | |
| 123 | N | A | -1.8170 | |
| 124 | R | A | -2.3282 | |
| 125 | G | A | -1.9274 | |
| 126 | P | A | -1.2936 | |
| 127 | G | A | -1.6809 | |
| 128 | P | A | -2.0654 | |
| 129 | G | A | -1.8151 | |
| 130 | R | A | -2.3963 | |
| 131 | N | A | -2.9047 | |
| 132 | Q | A | -2.4113 | |
| 133 | A | A | 0.0000 | |
| 134 | A | A | -2.9986 | |
| 135 | K | A | -3.0478 | |
| 136 | G | A | -2.7461 | |
| 137 | E | A | -3.6057 | |
| 138 | T | A | -2.5988 | |
| 139 | R | A | -2.6481 | |
| 140 | C | A | 0.0000 | |
| 141 | F | A | -0.7973 | |
| 142 | A | A | -0.8109 | |
| 143 | K | A | -1.4644 | |
| 144 | V | A | 0.0000 | |
| 145 | G | A | 0.0000 | |
| 146 | P | A | -1.1733 | |
| 147 | G | A | -1.0652 | |
| 148 | P | A | -1.0999 | |
| 149 | G | A | -1.1967 | |
| 150 | S | A | -1.4064 | |
| 151 | Q | A | -1.8803 | |
| 152 | E | A | -1.9059 | |
| 153 | S | A | -1.1714 | |
| 154 | L | A | -0.2535 | |
| 155 | S | A | -0.9419 | |
| 156 | D | A | -2.2156 | |
| 157 | L | A | -0.9965 | |
| 158 | G | A | -1.6030 | |
| 159 | A | A | -1.1890 | |
| 160 | I | A | 0.0000 | |
| 161 | E | A | -2.8362 | |
| 162 | S | A | -1.5868 | |
| 163 | L | A | 0.0000 | |
| 164 | R | A | -2.6805 | |
| 165 | G | A | -1.3068 | |
| 166 | P | A | 0.0000 | |
| 167 | G | A | 0.0000 | |
| 168 | P | A | -0.1361 | |
| 169 | G | A | 0.0887 | |
| 170 | L | A | 0.9373 | |
| 171 | L | A | 0.0000 | |
| 172 | L | A | 0.7142 | |
| 173 | L | A | 1.0354 | |
| 174 | Y | A | 0.3007 | |
| 175 | I | A | 0.0000 | |
| 176 | E | A | -1.6874 | |
| 177 | D | A | -2.2973 | |
| 178 | L | A | -1.6064 | |
| 179 | L | A | 0.0000 | |
| 180 | S | A | -2.3029 | |
| 181 | R | A | -2.6972 | |
| 182 | C | A | 0.0000 | |
| 183 | S | A | -1.4191 | |
| 184 | S | A | -0.9962 | |
| 185 | G | A | -0.7767 | |
| 186 | P | A | -0.4000 | |
| 187 | G | A | -0.0713 | |
| 188 | P | A | -0.2497 | |
| 189 | G | A | 0.0000 | |
| 190 | L | A | 0.2553 | |
| 191 | L | A | 0.0000 | |
| 192 | N | A | -0.7873 | |
| 193 | Y | A | 0.5676 | |
| 194 | A | A | 0.0000 | |
| 195 | V | A | 0.3031 | |
| 196 | Y | A | -0.1031 | |
| 197 | N | A | -0.6397 | |
| 198 | P | A | -0.0774 | |
| 199 | A | A | 0.0030 | |
| 200 | L | A | -0.4879 | |
| 201 | G | A | -0.3912 | |
| 202 | Y | A | 0.6969 | |
| 203 | S | A | 0.0000 | |
| 204 | Q | A | -1.3979 | |
| 205 | G | A | -1.0668 | |
| 206 | P | A | -1.0542 | |
| 207 | G | A | -0.9283 | |
| 208 | P | A | -0.9503 | |
| 209 | G | A | -0.9809 | |
| 210 | R | A | -1.0402 | |
| 211 | I | A | 0.0000 | |
| 212 | K | A | -0.9951 | |
| 213 | I | A | -0.5064 | |
| 214 | L | A | -0.0437 | |
| 215 | C | A | -0.2218 | |
| 216 | A | A | -0.2725 | |
| 217 | T | A | 0.0000 | |
| 218 | Y | A | -0.1272 | |
| 219 | V | A | 0.0000 | |
| 220 | K | A | -1.7703 | |
| 221 | V | A | -0.8013 | |
| 222 | N | A | -1.5924 | |
| 223 | I | A | -0.9372 | |
| 224 | R | A | -2.0698 | |
| 225 | G | A | -1.6637 | |
| 226 | P | A | -1.2365 | |
| 227 | G | A | -1.1414 | |
| 228 | P | A | -1.2499 | |
| 229 | G | A | -1.1689 | |
| 230 | S | A | -1.4811 | |
| 231 | D | A | -1.5087 | |
| 232 | A | A | 0.0000 | |
| 233 | C | A | 0.0000 | |
| 234 | L | A | 0.1625 | |
| 235 | G | A | 0.0000 | |
| 236 | L | A | 0.0000 | |
| 237 | L | A | 0.0000 | |
| 238 | A | A | 0.0395 | |
| 239 | V | A | 0.0000 | |
| 240 | A | A | 0.0000 | |
| 241 | A | A | 0.0000 | |
| 242 | V | A | 0.0000 | |
| 243 | A | A | 0.0000 | |
| 244 | A | A | 0.0000 | |
| 245 | G | A | 0.0000 | |
| 246 | P | A | 0.0708 | |
| 247 | G | A | 0.0000 | |
| 248 | P | A | -0.5587 | |
| 249 | G | A | -1.0021 | |
| 250 | V | A | 0.0000 | |
| 251 | Y | A | -0.4867 | |
| 252 | R | A | 0.0000 | |
| 253 | E | A | -1.1525 | |
| 254 | Y | A | -0.8797 | |
| 255 | T | A | -0.9603 | |
| 256 | D | A | -0.9511 | |
| 257 | A | A | -0.3904 | |
| 258 | S | A | -0.1334 | |
| 259 | F | A | 0.1412 | |
| 260 | A | A | -0.3830 | |
| 261 | N | A | -1.8030 | |
| 262 | R | A | -2.1119 | |
| 263 | K | A | -2.1318 | |
| 264 | E | A | -2.2507 | |
| 265 | G | A | -1.6322 | |
| 266 | P | A | -1.3652 | |
| 267 | G | A | -1.3914 | |
| 268 | P | A | -0.9884 | |
| 269 | G | A | -0.9137 | |
| 270 | Y | A | 0.0000 | |
| 271 | T | A | -0.1530 | |
| 272 | D | A | -0.1934 | |
| 273 | A | A | 0.0274 | |
| 274 | S | A | -0.1195 | |
| 275 | F | A | -0.0426 | |
| 276 | A | A | -0.4680 | |
| 277 | N | A | -1.3156 | |
| 278 | R | A | 0.0000 | |
| 279 | K | A | -2.4170 | |
| 280 | E | A | -2.0809 | |
| 281 | R | A | -1.9582 | |
| 282 | G | A | -1.5370 | |
| 283 | P | A | -1.2067 | |
| 284 | E | A | -1.5331 | |
| 285 | E | A | -0.7764 | |
| 286 | E | A | -0.4194 | |
| 287 | I | A | 1.1849 | |
| 288 | F | A | 0.7907 | |
| 289 | M | A | 0.0000 | |
| 290 | Y | A | 0.9318 | |
| 291 | L | A | 1.1131 | |
| 292 | L | A | 0.0000 | |
| 293 | T | A | 0.0000 | |
| 294 | V | A | 0.5911 | |
| 295 | F | A | 0.0000 | |
| 296 | L | A | 0.0000 | |
| 297 | I | A | 0.0000 | |
| 298 | T | A | 0.2999 | |
| 299 | Q | A | 0.0601 | |
| 300 | M | A | 0.0000 | |
| 301 | I | A | -0.0222 | |
| 302 | G | A | 0.6750 | |
| 303 | S | A | 0.0000 | |
| 304 | A | A | 0.0000 | |
| 305 | L | A | 1.3633 | |
| 306 | F | A | 1.5671 | |
| 307 | A | A | 1.4787 | |
| 308 | V | A | 2.1835 |