| Chain sequence(s) |
B: LALMKALMDGIMAAFKVAEKLIAQLSEETRAKALAEQKAFKARIAELVAK
input PDB |
| Selected Chain(s) | B |
| Distance of aggregation | 10 Å |
| FoldX usage | Yes |
| Dynamic mode | No |
| Automated mutations | No |
| Downloads | Download all the data |
| Simulation log |
[INFO] Logger: Verbosity set to: 2 - [INFO] (00:00:00)
[WARNING] runJob: Working directory already exists (possibly overwriting previous results -ow
to prevent this behavior) (00:00:00)
[INFO] runJob: Starting aggrescan3d job on: input.pdb with B chain(s) selected (00:00:00)
[INFO] runJob: Creating pdb object from: input.pdb (00:00:00)
[INFO] FoldX: Starting FoldX energy minimalization (00:00:00)
[INFO] Analysis: Starting Aggrescan3D on folded.pdb (00:01:49)
[INFO] Main: Simulation completed successfully. (00:01:49)
|
The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.
| residue index | residue name | chain | Aggrescan3D score | mutation |
|---|---|---|---|---|
| residue index | residue name | chain | Aggrescan3D score | |
| 1 | L | B | 1.8797 | |
| 2 | A | B | 1.1158 | |
| 3 | L | B | 1.8489 | |
| 4 | M | B | 1.0840 | |
| 5 | K | B | -0.6529 | |
| 6 | A | B | -0.0666 | |
| 7 | L | B | 0.5581 | |
| 8 | M | B | -0.3816 | |
| 9 | D | B | -1.6810 | |
| 10 | G | B | -1.1089 | |
| 11 | I | B | -0.5637 | |
| 12 | M | B | -0.5210 | |
| 13 | A | B | -0.6066 | |
| 14 | A | B | -0.2979 | |
| 15 | F | B | 0.0000 | |
| 16 | K | B | -1.6202 | |
| 17 | V | B | 0.2172 | |
| 18 | A | B | -0.5774 | |
| 19 | E | B | -2.2013 | |
| 20 | K | B | -1.9243 | |
| 21 | L | B | -0.3981 | |
| 22 | I | B | 0.0000 | |
| 23 | A | B | -1.1617 | |
| 24 | Q | B | -1.4705 | |
| 25 | L | B | -0.9420 | |
| 26 | S | B | -1.8276 | |
| 27 | E | B | -3.3173 | |
| 28 | E | B | -3.3265 | |
| 29 | T | B | -2.3541 | |
| 30 | R | B | -2.7231 | |
| 31 | A | B | -2.2309 | |
| 32 | K | B | -3.0762 | |
| 33 | A | B | -2.1238 | |
| 34 | L | B | -1.2903 | |
| 35 | A | B | -1.7032 | |
| 36 | E | B | -2.4021 | |
| 37 | Q | B | 0.0000 | |
| 38 | K | B | -2.3613 | |
| 39 | A | B | -1.3490 | |
| 40 | F | B | -0.7588 | |
| 41 | K | B | -1.5812 | |
| 42 | A | B | -1.5867 | |
| 43 | R | B | -1.8693 | |
| 44 | I | B | -0.5392 | |
| 45 | A | B | -0.9163 | |
| 46 | E | B | -1.8995 | |
| 47 | L | B | -0.2063 | |
| 48 | V | B | 0.0591 | |
| 49 | A | B | -0.8557 | |
| 50 | K | B | -1.4972 |