Project name: Nb_E

Status: done

Started: 2025-07-21 09:10:12
Settings
Chain sequence(s) A: QVQLVESGGGLVQPGGSLRLSCAASGDSSFDFTTYSLGWFRQAPGQGLEAVAAISSDGQYTYYADSVKGRFTISRDNSKNTLYLQMNSLRAEDTAVYYCAASPRPVVRSMKPEEYQYWGQGTLVTVSS
input PDB
Selected Chain(s) A
Distance of aggregation 10 Å
FoldX usage Yes
Dynamic mode No
Automated mutations No
Downloads Download all the data
Simulation log
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:00)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:00)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with A chain(s) selected             (00:00:00)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:00)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:00:00)
[INFO]       Analysis: Starting Aggrescan3D on folded.pdb                                          (00:00:55)
[INFO]       Main:     Simulation completed successfully.                                          (00:00:56)
Show buried residues

Minimal score value
-2.6222
Maximal score value
1.7568
Average score
-0.7699
Total score value
-98.5486

The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan3D score mutation
residue index residue name chain Aggrescan3D score
mutation
1 Q A -1.9614
2 V A -1.6054
3 Q A -1.3961
4 L A 0.0000
5 V A 0.6265
6 E A 0.0000
7 S A -0.1894
8 G A -0.7860
9 G A 0.1395
10 G A 0.6566
11 L A 1.4216
12 V A -0.0591
13 Q A -1.3262
14 P A -1.5333
15 G A -1.2888
16 G A -0.8985
17 S A -1.3091
18 L A -0.9892
19 R A -2.2190
20 L A 0.0000
21 S A -0.4819
22 C A 0.0000
23 A A -0.2748
24 A A 0.0000
25 S A -1.4240
26 G A -2.0634
27 D A -2.6107
28 S A -1.4871
29 S A -1.2265
30 F A -1.4240
31 D A -1.5498
32 F A 0.0000
33 T A -1.1534
34 T A -1.0753
35 Y A -0.8776
36 S A 0.0000
37 L A 0.0000
38 G A 0.0000
39 W A 0.0000
40 F A 0.0000
41 R A 0.0000
42 Q A -0.9490
43 A A -1.1442
44 P A -0.9774
45 G A -1.2831
46 Q A -1.9620
47 G A -1.4350
48 L A -0.9287
49 E A -1.8992
50 A A 0.0000
51 V A 0.0000
52 A A 0.0000
53 A A 0.0000
54 I A 0.0000
55 S A -0.6074
56 S A -1.3731
57 D A -2.1845
58 G A -1.4486
59 Q A -1.2326
60 Y A 0.3459
61 T A 0.3225
62 Y A -0.1284
63 Y A -1.0746
64 A A -1.7154
65 D A -2.4505
66 S A -1.7954
67 V A 0.0000
68 K A -2.6222
69 G A -1.7986
70 R A -1.4670
71 F A 0.0000
72 T A -0.8984
73 I A 0.0000
74 S A -0.5411
75 R A -1.1627
76 D A -1.4729
77 N A -2.0425
78 S A -1.5726
79 K A -2.3457
80 N A -1.8449
81 T A -0.9986
82 L A 0.0000
83 Y A -0.5804
84 L A 0.0000
85 Q A -1.4548
86 M A 0.0000
87 N A -1.5059
88 S A -1.2428
89 L A 0.0000
90 R A -2.3058
91 A A -1.7298
92 E A -2.2563
93 D A 0.0000
94 T A -0.4099
95 A A 0.0000
96 V A 0.8763
97 Y A 0.0000
98 Y A 0.2593
99 C A 0.0000
100 A A 0.0000
101 A A 0.0000
102 S A 0.0000
103 P A -1.4459
104 R A -2.0307
105 P A -1.0150
106 V A -0.2575
107 V A 0.0527
108 R A -1.1961
109 S A -0.9437
110 M A 0.0000
111 K A -2.1050
112 P A -1.8735
113 E A -2.5974
114 E A -2.0145
115 Y A 0.0000
116 Q A -1.6748
117 Y A -0.5482
118 W A -0.0154
119 G A -0.1834
120 Q A -0.8870
121 G A 0.0000
122 T A 0.6349
123 L A 1.7568
124 V A 0.0000
125 T A 0.3767
126 V A 0.0000
127 S A -0.6828
128 S A -0.4950
Download PDB file
View in 3Dmol
Play the video

Laboratory of Theory of Biopolymers 2018