Project name: query_structure

Status: done

Started: 2026-03-16 23:47:35
Settings
Chain sequence(s) A: GYCAEKGIKCHNIHCCSGLTCKCKGSSCVCRK
input PDB
Selected Chain(s) A
Distance of aggregation 10 Å
FoldX usage Yes
Dynamic mode No
Automated mutations No
Downloads Download all the data
Simulation log
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:00)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:00)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with A chain(s) selected             (00:00:00)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:00)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:00:00)
[INFO]       Analysis: Starting Aggrescan3D on folded.pdb                                          (00:00:23)
[INFO]       Main:     Simulation completed successfully.                                          (00:00:23)
Show buried residues

Minimal score value
-3.0392
Maximal score value
1.0178
Average score
-1.1748
Total score value
-37.5934

The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan3D score mutation
residue index residue name chain Aggrescan3D score
mutation
1 G A 0.2990
2 Y A 1.0178
3 C A 0.4915
4 A A 0.0000
5 E A -2.5168
6 K A -3.0392
7 G A -1.5943
8 I A -0.8411
9 K A -1.9852
10 C A 0.0000
11 H A -1.7802
12 N A -1.8747
13 I A -0.7971
14 H A -1.2346
15 C A 0.0000
16 C A -0.5920
17 S A -0.9896
18 G A -1.4701
19 L A -2.0388
20 T A -1.5670
21 C A -1.5286
22 K A -1.8456
23 C A -1.1862
24 K A -1.8828
25 G A -1.3792
26 S A -0.7943
27 S A -0.9260
28 C A -0.8280
29 V A -1.2989
30 C A 0.0000
31 R A -2.7006
32 K A -2.7108
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Laboratory of Theory of Biopolymers 2018