| Chain sequence(s) |
H: QVQLQQPGAELVKPGASVKLSCKASGYTFTTFWMHWVKQRPGRGLEWIGRIVPNSGETTYNEKFKSKATLTADKSSSTAYMRLSSLTSEDSAVYYCARPDYWGQGTTLTVSS
L: DIQMTQSPSSLSASLGERVSLTCRASQKINGFLSWLQQKPDGTIKRLINAAVILDSGVPKRFSGSRSGSDYSLTISSLESEDFADYYCLQYATYPWTFGGGTKLEIK input PDB |
| Selected Chain(s) | H,L |
| Distance of aggregation | 10 Å |
| FoldX usage | Yes |
| Dynamic mode | No |
| Automated mutations | No |
| Downloads | Download all the data |
| Simulation log |
[INFO] Logger: Verbosity set to: 2 - [INFO] (00:00:00)
[WARNING] runJob: Working directory already exists (possibly overwriting previous results -ow
to prevent this behavior) (00:00:00)
[INFO] runJob: Starting aggrescan3d job on: input.pdb with all chain(s) selected (00:00:00)
[INFO] runJob: Creating pdb object from: input.pdb (00:00:00)
[INFO] FoldX: Starting FoldX energy minimalization (00:00:00)
[INFO] Analysis: Starting Aggrescan3D on folded.pdb (00:01:33)
[INFO] Main: Simulation completed successfully. (00:01:35)
|
The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.
| residue index | residue name | chain | Aggrescan3D score | mutation |
|---|---|---|---|---|
| residue index | residue name | chain | Aggrescan3D score | |
| 1 | Q | H | -1.5049 | |
| 2 | V | H | -0.8835 | |
| 3 | Q | H | -1.7076 | |
| 4 | L | H | 0.0000 | |
| 5 | Q | H | -2.0622 | |
| 6 | Q | H | 0.0000 | |
| 7 | P | H | -0.9752 | |
| 8 | G | H | -0.9201 | |
| 9 | A | H | -0.2466 | |
| 11 | E | H | -0.3386 | |
| 12 | L | H | 0.8315 | |
| 13 | V | H | -0.2572 | |
| 14 | K | H | -1.6447 | |
| 15 | P | H | -1.3255 | |
| 16 | G | H | -1.0977 | |
| 17 | A | H | -0.8638 | |
| 18 | S | H | -1.3016 | |
| 19 | V | H | 0.0000 | |
| 20 | K | H | -2.4258 | |
| 21 | L | H | 0.0000 | |
| 22 | S | H | -1.0326 | |
| 23 | C | H | 0.0000 | |
| 24 | K | H | -1.7488 | |
| 25 | A | H | 0.0000 | |
| 26 | S | H | -1.2417 | |
| 27 | G | H | -1.0271 | |
| 28 | Y | H | -0.3172 | |
| 29 | T | H | -0.2499 | |
| 30 | F | H | 0.0000 | |
| 35 | T | H | -0.8278 | |
| 36 | T | H | 0.1049 | |
| 37 | F | H | 0.8102 | |
| 38 | W | H | 0.3017 | |
| 39 | M | H | 0.0000 | |
| 40 | H | H | 0.0000 | |
| 41 | W | H | 0.0000 | |
| 42 | V | H | 0.0000 | |
| 43 | K | H | 0.0000 | |
| 44 | Q | H | -0.9730 | |
| 45 | R | H | -1.6404 | |
| 46 | P | H | -1.2349 | |
| 47 | G | H | -1.6204 | |
| 48 | R | H | -2.5000 | |
| 49 | G | H | -1.4883 | |
| 50 | L | H | 0.0000 | |
| 51 | E | H | -0.9895 | |
| 52 | W | H | 0.0000 | |
| 53 | I | H | 0.0000 | |
| 54 | G | H | 0.0000 | |
| 55 | R | H | -0.1598 | |
| 56 | I | H | 0.0000 | |
| 57 | V | H | -0.6087 | |
| 58 | P | H | 0.0000 | |
| 59 | N | H | -1.9489 | |
| 62 | S | H | -1.4869 | |
| 63 | G | H | -1.8187 | |
| 64 | E | H | -1.8689 | |
| 65 | T | H | -0.7892 | |
| 66 | T | H | -0.5787 | |
| 67 | Y | H | -1.1189 | |
| 68 | N | H | -2.0613 | |
| 69 | E | H | -3.4021 | |
| 70 | K | H | -3.2029 | |
| 71 | F | H | 0.0000 | |
| 72 | K | H | -2.9808 | |
| 74 | S | H | -1.7781 | |
| 75 | K | H | -1.6434 | |
| 76 | A | H | 0.0000 | |
| 77 | T | H | -1.1513 | |
| 78 | L | H | 0.0000 | |
| 79 | T | H | -0.9606 | |
| 80 | A | H | -1.1025 | |
| 81 | D | H | -1.8539 | |
| 82 | K | H | -2.4700 | |
| 83 | S | H | -1.2908 | |
| 84 | S | H | -1.0700 | |
| 85 | S | H | -1.2327 | |
| 86 | T | H | 0.0000 | |
| 87 | A | H | 0.0000 | |
| 88 | Y | H | -0.8134 | |
| 89 | M | H | 0.0000 | |
| 90 | R | H | -2.2271 | |
| 91 | L | H | 0.0000 | |
| 92 | S | H | -1.0538 | |
| 93 | S | H | -0.7760 | |
| 94 | L | H | 0.0000 | |
| 95 | T | H | -1.2407 | |
| 96 | S | H | -1.4523 | |
| 97 | E | H | -2.0203 | |
| 98 | D | H | 0.0000 | |
| 99 | S | H | -0.6944 | |
| 100 | A | H | 0.0000 | |
| 101 | V | H | -0.1098 | |
| 102 | Y | H | 0.0000 | |
| 103 | Y | H | 0.0000 | |
| 104 | C | H | 0.0000 | |
| 105 | A | H | 0.0000 | |
| 106 | R | H | 0.0000 | |
| 107 | P | H | 0.1661 | |
| 116 | D | H | -0.1958 | |
| 117 | Y | H | 0.1978 | |
| 118 | W | H | -0.2843 | |
| 119 | G | H | 0.0000 | |
| 120 | Q | H | -1.2964 | |
| 121 | G | H | 0.0000 | |
| 122 | T | H | 0.0000 | |
| 123 | T | H | -0.1879 | |
| 124 | L | H | 0.0000 | |
| 125 | T | H | -0.1611 | |
| 126 | V | H | 0.0000 | |
| 127 | S | H | -0.6407 | |
| 128 | S | H | -0.7693 | |
| 1 | D | L | -2.2418 | |
| 2 | I | L | 0.0000 | |
| 3 | Q | L | -2.1719 | |
| 4 | M | L | 0.0000 | |
| 5 | T | L | -1.3273 | |
| 6 | Q | L | -1.0788 | |
| 7 | S | L | -0.7218 | |
| 8 | P | L | -0.5823 | |
| 9 | S | L | -0.8432 | |
| 10 | S | L | -1.1289 | |
| 11 | L | L | -0.5774 | |
| 12 | S | L | -0.7986 | |
| 13 | A | L | 0.0000 | |
| 14 | S | L | -0.5388 | |
| 15 | L | L | 0.0976 | |
| 16 | G | L | -1.0878 | |
| 17 | E | L | -1.7632 | |
| 18 | R | L | -2.2896 | |
| 19 | V | L | 0.0000 | |
| 20 | S | L | -0.5991 | |
| 21 | L | L | 0.0000 | |
| 22 | T | L | -0.9102 | |
| 23 | C | L | 0.0000 | |
| 24 | R | L | -2.9095 | |
| 25 | A | L | 0.0000 | |
| 26 | S | L | -2.2092 | |
| 27 | Q | L | -2.9216 | |
| 28 | K | L | -2.8981 | |
| 29 | I | L | 0.0000 | |
| 36 | N | L | -1.8336 | |
| 37 | G | L | -0.2486 | |
| 38 | F | L | 1.0134 | |
| 39 | L | L | 0.0000 | |
| 40 | S | L | 0.0000 | |
| 41 | W | L | 0.0000 | |
| 42 | L | L | 0.0000 | |
| 43 | Q | L | 0.0000 | |
| 44 | Q | L | 0.0000 | |
| 45 | K | L | -1.5039 | |
| 46 | P | L | -1.3559 | |
| 47 | D | L | -2.1893 | |
| 48 | G | L | -1.4196 | |
| 49 | T | L | -1.1207 | |
| 50 | I | L | 0.0000 | |
| 51 | K | L | -0.9541 | |
| 52 | R | L | -0.6906 | |
| 53 | L | L | 0.0000 | |
| 54 | I | L | 0.0000 | |
| 55 | N | L | 1.1306 | |
| 56 | A | L | 1.2750 | |
| 57 | A | L | 0.0000 | |
| 65 | V | L | 2.5171 | |
| 66 | I | L | 2.7947 | |
| 67 | L | L | 1.0740 | |
| 68 | D | L | -0.0708 | |
| 69 | S | L | -0.2925 | |
| 70 | G | L | -0.8360 | |
| 71 | V | L | 0.0000 | |
| 72 | P | L | -1.1329 | |
| 74 | K | L | -1.9286 | |
| 75 | R | L | -1.5425 | |
| 76 | F | L | 0.0000 | |
| 77 | S | L | 0.0685 | |
| 78 | G | L | 0.5861 | |
| 79 | S | L | -0.2698 | |
| 80 | R | L | -1.8585 | |
| 83 | S | L | -1.4855 | |
| 84 | G | L | -1.6647 | |
| 85 | S | L | -2.2361 | |
| 86 | D | L | -2.0592 | |
| 87 | Y | L | 0.0000 | |
| 88 | S | L | -0.7582 | |
| 89 | L | L | 0.0000 | |
| 90 | T | L | -0.6396 | |
| 91 | I | L | 0.0000 | |
| 92 | S | L | -1.5564 | |
| 93 | S | L | -1.4590 | |
| 94 | L | L | 0.0000 | |
| 95 | E | L | -1.7498 | |
| 96 | S | L | -1.0276 | |
| 97 | E | L | -1.9409 | |
| 98 | D | L | 0.0000 | |
| 99 | F | L | -0.8213 | |
| 100 | A | L | 0.0000 | |
| 101 | D | L | -1.2516 | |
| 102 | Y | L | 0.0000 | |
| 103 | Y | L | 0.0000 | |
| 104 | C | L | 0.0000 | |
| 105 | L | L | 0.0000 | |
| 106 | Q | L | 0.0000 | |
| 107 | Y | L | 0.7980 | |
| 108 | A | L | 0.1589 | |
| 109 | T | L | 0.1303 | |
| 114 | Y | L | 0.5042 | |
| 115 | P | L | -0.3527 | |
| 116 | W | L | 0.0732 | |
| 117 | T | L | -0.4062 | |
| 118 | F | L | -0.2077 | |
| 119 | G | L | 0.0000 | |
| 120 | G | L | -1.2019 | |
| 121 | G | L | 0.0000 | |
| 122 | T | L | 0.0000 | |
| 123 | K | L | -1.9996 | |
| 124 | L | L | 0.0000 | |
| 125 | E | L | -1.3162 | |
| 126 | I | L | 0.6459 | |
| 127 | K | L | -0.9684 |