Project name: 4R7D

Status: done

Started: 2026-03-30 05:49:29
Settings
Chain sequence(s) H: QVQLQESGPGLVKPSDTLSLTCAVSGYSITGGYSWHWIRQPPGKGLEWMGYIHYSGYTDFNPSLKTRITISRDTSKNQFSLKLSSVTAVDTAVYYCARKDPSDAFPYWGQGTLVTVSS
L: EIVLTQSPDFQSVTPKEKVTITCRASQSISDHLHWYQQKPDQSPKLLIKYASHAISGVPSRFSGSGSGTDFTLTINSLEAEDAATYYCQQGHSFPLTFGGGTKVEIK
input PDB
Selected Chain(s) H,L
Distance of aggregation 10 Å
FoldX usage Yes
Dynamic mode No
Automated mutations No
Downloads Download all the data
Simulation log
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:00)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:00)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with all chain(s) selected           (00:00:00)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:00)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:00:00)
[INFO]       Analysis: Starting Aggrescan3D on folded.pdb                                          (00:00:56)
[INFO]       Main:     Simulation completed successfully.                                          (00:00:57)
Show buried residues

Minimal score value
-3.8255
Maximal score value
1.7456
Average score
-0.5917
Total score value
-133.133

The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan3D score mutation
residue index residue name chain Aggrescan3D score
mutation
1 Q H -1.4865
2 V H 0.0000
3 Q H -1.6756
4 L H 0.0000
5 Q H -1.7956
6 E H 0.0000
7 S H -0.7427
8 G H -0.4959
9 P H -0.1871
11 G H 0.1224
12 L H 0.3628
13 V H 0.0000
14 K H -1.4963
15 P H -1.2280
16 S H -1.1763
17 D H -1.5716
18 T H -1.1975
19 L H 0.0000
20 S H -0.8838
21 L H 0.0000
22 T H -0.7839
23 C H 0.0000
24 A H -1.2069
25 V H 0.0000
26 S H -1.2920
27 G H -1.0349
28 Y H -0.4215
29 S H -0.4163
30 I H 0.0000
31 T H -0.1462
35 G H -0.2906
36 G H 0.0279
37 Y H 0.2055
38 S H 0.0000
39 W H 0.0000
40 H H 0.0000
41 W H 0.0000
42 I H 0.0000
43 R H 0.0000
44 Q H -0.6361
45 P H -0.4406
46 P H -0.7147
47 G H -1.4950
48 K H -2.2597
49 G H -1.4009
50 L H 0.0000
51 E H -0.7293
52 W H 0.0000
53 M H 0.0000
54 G H 0.0000
55 Y H 0.1782
56 I H 0.0000
57 H H 0.3053
58 Y H 0.5369
59 S H 0.2756
63 G H 0.3418
64 Y H 1.0896
65 T H 0.4013
66 D H -0.0753
67 F H -0.1777
68 N H -0.5665
69 P H -0.8135
70 S H -0.6762
71 L H 0.0000
72 K H -1.2439
74 T H -0.7809
75 R H -0.9923
76 I H 0.0000
77 T H -0.7689
78 I H 0.0000
79 S H -0.6319
80 R H -1.2467
81 D H -1.7218
82 T H -1.3098
83 S H -1.4555
84 K H -2.3161
85 N H -1.5824
86 Q H -1.5613
87 F H 0.0000
88 S H -0.7683
89 L H 0.0000
90 K H -1.3741
91 L H 0.0000
92 S H -0.9800
93 S H -0.9149
94 V H 0.0000
95 T H 0.0598
96 A H 0.6609
97 V H 1.7456
98 D H 0.0000
99 T H 0.7623
100 A H 0.0000
101 V H 0.2512
102 Y H 0.0000
103 Y H 0.0000
104 C H 0.0000
105 A H 0.0000
106 R H 0.0000
107 K H -0.3084
108 D H -0.4722
109 P H -0.4593
110 S H -0.4970
113 D H -0.6647
114 A H 0.0000
115 F H 0.0000
116 P H -0.2551
117 Y H -0.3234
118 W H -0.6721
119 G H 0.0000
120 Q H -1.9117
121 G H 0.0000
122 T H -0.1082
123 L H 0.7421
124 V H 0.0000
125 T H 0.3817
126 V H 0.0000
127 S H -0.5906
128 S H -0.6134
1 E L -1.3825
2 I L 0.0000
3 V L 0.6965
4 L L 0.0000
5 T L -0.8333
6 Q L -0.8864
7 S L -0.9166
8 P L -0.6910
9 D L -1.4314
10 F L 0.2561
11 Q L -0.4095
12 S L -0.6838
13 V L -1.3327
14 T L -2.1396
15 P L -2.4796
16 K L -3.4036
17 E L -3.8255
18 K L -3.0433
19 V L 0.0000
20 T L -0.5599
21 I L 0.0000
22 T L -1.0343
23 C L 0.0000
24 R L -2.3234
25 A L 0.0000
26 S L -0.9827
27 Q L -1.6060
28 S L -1.5121
29 I L 0.0000
36 S L -1.1807
37 D L -1.5192
38 H L -1.0880
39 L L 0.0000
40 H L 0.0000
41 W L 0.0000
42 Y L 0.0000
43 Q L 0.0000
44 Q L 0.0000
45 K L -1.7642
46 P L -1.6709
47 D L -2.6103
48 Q L -2.5107
49 S L -1.5157
50 P L 0.0000
51 K L -1.3074
52 L L 0.0000
53 L L 0.0000
54 I L 0.0000
55 K L -0.7378
56 Y L -0.5077
57 A L 0.0000
65 S L -0.8676
66 H L -0.9649
67 A L -0.3913
68 I L -0.0317
69 S L -0.2609
70 G L -0.3687
71 V L -0.1612
72 P L -0.2511
74 S L -0.4970
75 R L -1.1995
76 F L 0.0000
77 S L -0.6081
78 G L -0.4953
79 S L -0.7735
80 G L -1.1417
83 S L -1.2894
84 G L -1.4209
85 T L -1.8289
86 D L -2.2224
87 F L 0.0000
88 T L -0.7250
89 L L 0.0000
90 T L 0.0000
91 I L 0.0000
92 N L -2.4617
93 S L -2.8063
94 L L 0.0000
95 E L -2.5999
96 A L -1.8620
97 E L -2.1643
98 D L 0.0000
99 A L -1.2548
100 A L 0.0000
101 T L -0.8438
102 Y L 0.0000
103 Y L 0.0000
104 C L 0.0000
105 Q L 0.0000
106 Q L 0.0000
107 G L 0.0000
108 H L -0.7574
109 S L -0.2855
114 F L 0.4554
115 P L 0.0000
116 L L 0.0000
117 T L -0.0202
118 F L 0.0000
119 G L 0.0000
120 G L -1.2424
121 G L -1.1568
122 T L 0.0000
123 K L -1.3160
124 V L 0.0000
125 E L -1.2261
126 I L -1.6362
127 K L -1.9300
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Laboratory of Theory of Biopolymers 2018