Project name: P2C11

Status: done

Started: 2026-06-05 02:10:01
Settings
Chain sequence(s) H: QVQLQQPGAEFLKPGASVKLSCKASGYTFTNYWMHWVKQRPGRGLEWIGRIDPDNGETNYNEKFKTRATLTVDNPSSTAYMQLSSLTSDDSAVYYCARRAYYSRNALDYWGQGTSVTVSA
L: VLTQSPLSLPVTLGQPASISCRSSQSLVFSDGNTYLHWFQQRPGQPPRRLIYQVSNRDSGVPDRFSGSGSGTDFTLKISRVEAEDVGVYYCMQALQVHSTFGPGTTVDIK
input PDB
Selected Chain(s) H,L
Distance of aggregation 10 Å
FoldX usage Yes
Dynamic mode No
Automated mutations No
Downloads Download all the data
Simulation log
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:00)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:00)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with all chain(s) selected           (00:00:00)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:00)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:00:00)
[INFO]       Analysis: Starting Aggrescan3D on folded.pdb                                          (00:01:11)
[INFO]       Main:     Simulation completed successfully.                                          (00:01:12)
Show buried residues

Minimal score value
-3.2913
Maximal score value
1.4117
Average score
-0.5447
Total score value
-125.2771

The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan3D score mutation
residue index residue name chain Aggrescan3D score
mutation
1 Q H -1.3893
2 V H -0.8949
3 Q H -1.4317
4 L H 0.0000
5 Q H -1.6942
6 Q H -1.1684
7 P H -0.8907
8 G H -0.8820
9 A H -0.0302
11 E H 0.2275
12 F H 1.3701
13 L H -0.0291
14 K H -1.5522
15 P H -1.3948
16 G H -1.1403
17 A H -0.9349
18 S H -1.0656
19 V H 0.0000
20 K H -1.2767
21 L H 0.0000
22 S H -0.5669
23 C H 0.0000
24 K H -1.3373
25 A H 0.0000
26 S H -1.0252
27 G H -0.9555
28 Y H -0.5202
29 T H -0.4589
30 F H 0.0000
35 T H -1.5297
36 N H -1.4113
37 Y H -0.2573
38 W H -0.3228
39 M H 0.0000
40 H H 0.0000
41 W H 0.0000
42 V H 0.0000
43 K H 0.0000
44 Q H -1.0760
45 R H -1.7675
46 P H -1.2846
47 G H -1.6568
48 R H -2.5322
49 G H -1.4462
50 L H 0.0000
51 E H -1.2826
52 W H 0.0000
53 I H 0.0000
54 G H 0.0000
55 R H -0.3240
56 I H 0.0000
57 D H -1.5940
58 P H 0.0000
59 D H -2.9666
62 N H -2.5056
63 G H -1.8068
64 E H -1.8120
65 T H -1.0990
66 N H -0.8306
67 Y H -1.1869
68 N H 0.0000
69 E H -3.2913
70 K H -3.1750
71 F H 0.0000
72 K H -3.0453
74 T H -1.7964
75 R H -1.5698
76 A H 0.0000
77 T H -0.8276
78 L H 0.0000
79 T H -0.3063
80 V H -0.5312
81 D H -0.9492
82 N H -1.3703
83 P H -0.7321
84 S H -0.6962
85 S H -0.7310
86 T H 0.0000
87 A H 0.0000
88 Y H -0.1722
89 M H 0.0000
90 Q H -1.0754
91 L H 0.0000
92 S H -0.8877
93 S H -0.8705
94 L H 0.0000
95 T H -1.2548
96 S H -1.4116
97 D H -2.0080
98 D H 0.0000
99 S H -0.6440
100 A H 0.0000
101 V H -0.0333
102 Y H 0.0000
103 Y H 0.0000
104 C H 0.0000
105 A H 0.0000
106 R H 0.0000
107 R H 0.0930
108 A H 0.3428
109 Y H 0.9938
110 Y H 1.3736
111 S H 0.2627
112 R H -0.3853
113 N H 0.0000
114 A H 0.0000
115 L H 0.0000
116 D H -0.2243
117 Y H 0.0774
118 W H -0.3002
119 G H 0.0000
120 Q H -1.3524
121 G H 0.0000
122 T H 0.0000
123 S H -0.1289
124 V H 0.0000
125 T H 0.0627
126 V H 0.0000
127 S H -0.3277
128 A H -0.3564
3 V L 1.2301
4 L L 0.0000
5 T L -0.2197
6 Q L 0.0000
7 S L 0.0064
8 P L 0.4840
9 L L 1.4117
10 S L 0.5440
11 L L 0.1953
12 P L -0.3162
13 V L 0.0000
14 T L -0.8213
15 L L -0.4060
16 G L -1.2142
17 Q L -1.8023
18 P L -1.7607
19 A L 0.0000
20 S L -0.7108
21 I L 0.0000
22 S L -0.7430
23 C L 0.0000
24 R L -1.9661
25 S L -1.0336
26 S L -0.7076
27 Q L -1.1434
28 S L -0.6241
29 L L 0.0000
30 V L 0.7908
31 F L 0.5457
32 S L -0.5091
34 D L -1.7217
35 G L -0.9342
36 N L -0.5939
37 T L 0.0744
38 Y L 0.0000
39 L L 0.0000
40 H L 0.0000
41 W L 0.0000
42 F L 0.0000
43 Q L 0.0000
44 Q L -0.7120
45 R L -1.4316
46 P L -0.9038
47 G L -1.1701
48 Q L -1.3685
49 P L -0.8890
50 P L 0.0000
51 R L -0.8057
52 R L 0.0000
53 L L 0.0000
54 I L 0.0000
55 Y L -0.5964
56 Q L -0.4918
57 V L -0.5358
65 S L -0.7476
66 N L -1.1911
67 R L -1.6259
68 D L -1.1276
69 S L -0.7852
70 G L -0.8893
71 V L -1.0029
72 P L -1.1754
74 D L -2.2241
75 R L 0.0000
76 F L 0.0000
77 S L -1.2909
78 G L 0.0000
79 S L -0.8536
80 G L -1.0025
83 S L -0.7052
84 G L -0.6102
85 T L -1.4024
86 D L -1.8419
87 F L 0.0000
88 T L -0.9696
89 L L 0.0000
90 K L -1.6636
91 I L 0.0000
92 S L -2.1422
93 R L -2.8755
94 V L 0.0000
95 E L -1.9994
96 A L -0.9042
97 E L -2.0640
98 D L 0.0000
99 V L -0.0482
100 G L 0.0000
101 V L 0.4315
102 Y L 0.0000
103 Y L 0.0000
104 C L 0.0000
105 M L 0.0000
106 Q L 0.0000
107 A L 0.0000
108 L L 0.5838
109 Q L 0.1656
114 V L 1.1791
115 H L -0.0870
116 S L 0.0000
117 T L 0.2571
118 F L 0.0000
119 G L 0.0000
120 P L -0.1160
121 G L 0.0000
122 T L 0.0000
123 T L 0.5306
124 V L 0.0000
125 D L -0.0122
126 I L 0.0573
127 K L -1.2919
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Laboratory of Theory of Biopolymers 2018