| Chain sequence(s) |
H: QVQLQQPGAEFLKPGASVKLSCKASGYTFTNYWMHWVKQRPGRGLEWIGRIDPDNGETNYNEKFKTRATLTVDNPSSTAYMQLSSLTSDDSAVYYCARRAYYSRNALDYWGQGTSVTVSA
L: VLTQSPLSLPVTLGQPASISCRSSQSLVFSDGNTYLHWFQQRPGQPPRRLIYQVSNRDSGVPDRFSGSGSGTDFTLKISRVEAEDVGVYYCMQALQVHSTFGPGTTVDIK input PDB |
| Selected Chain(s) | H,L |
| Distance of aggregation | 10 Å |
| FoldX usage | Yes |
| Dynamic mode | No |
| Automated mutations | No |
| Downloads | Download all the data |
| Simulation log |
[INFO] Logger: Verbosity set to: 2 - [INFO] (00:00:00)
[WARNING] runJob: Working directory already exists (possibly overwriting previous results -ow
to prevent this behavior) (00:00:00)
[INFO] runJob: Starting aggrescan3d job on: input.pdb with all chain(s) selected (00:00:00)
[INFO] runJob: Creating pdb object from: input.pdb (00:00:00)
[INFO] FoldX: Starting FoldX energy minimalization (00:00:00)
[INFO] Analysis: Starting Aggrescan3D on folded.pdb (00:01:11)
[INFO] Main: Simulation completed successfully. (00:01:12)
|
The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.
| residue index | residue name | chain | Aggrescan3D score | mutation |
|---|---|---|---|---|
| residue index | residue name | chain | Aggrescan3D score | |
| 1 | Q | H | -1.3893 | |
| 2 | V | H | -0.8949 | |
| 3 | Q | H | -1.4317 | |
| 4 | L | H | 0.0000 | |
| 5 | Q | H | -1.6942 | |
| 6 | Q | H | -1.1684 | |
| 7 | P | H | -0.8907 | |
| 8 | G | H | -0.8820 | |
| 9 | A | H | -0.0302 | |
| 11 | E | H | 0.2275 | |
| 12 | F | H | 1.3701 | |
| 13 | L | H | -0.0291 | |
| 14 | K | H | -1.5522 | |
| 15 | P | H | -1.3948 | |
| 16 | G | H | -1.1403 | |
| 17 | A | H | -0.9349 | |
| 18 | S | H | -1.0656 | |
| 19 | V | H | 0.0000 | |
| 20 | K | H | -1.2767 | |
| 21 | L | H | 0.0000 | |
| 22 | S | H | -0.5669 | |
| 23 | C | H | 0.0000 | |
| 24 | K | H | -1.3373 | |
| 25 | A | H | 0.0000 | |
| 26 | S | H | -1.0252 | |
| 27 | G | H | -0.9555 | |
| 28 | Y | H | -0.5202 | |
| 29 | T | H | -0.4589 | |
| 30 | F | H | 0.0000 | |
| 35 | T | H | -1.5297 | |
| 36 | N | H | -1.4113 | |
| 37 | Y | H | -0.2573 | |
| 38 | W | H | -0.3228 | |
| 39 | M | H | 0.0000 | |
| 40 | H | H | 0.0000 | |
| 41 | W | H | 0.0000 | |
| 42 | V | H | 0.0000 | |
| 43 | K | H | 0.0000 | |
| 44 | Q | H | -1.0760 | |
| 45 | R | H | -1.7675 | |
| 46 | P | H | -1.2846 | |
| 47 | G | H | -1.6568 | |
| 48 | R | H | -2.5322 | |
| 49 | G | H | -1.4462 | |
| 50 | L | H | 0.0000 | |
| 51 | E | H | -1.2826 | |
| 52 | W | H | 0.0000 | |
| 53 | I | H | 0.0000 | |
| 54 | G | H | 0.0000 | |
| 55 | R | H | -0.3240 | |
| 56 | I | H | 0.0000 | |
| 57 | D | H | -1.5940 | |
| 58 | P | H | 0.0000 | |
| 59 | D | H | -2.9666 | |
| 62 | N | H | -2.5056 | |
| 63 | G | H | -1.8068 | |
| 64 | E | H | -1.8120 | |
| 65 | T | H | -1.0990 | |
| 66 | N | H | -0.8306 | |
| 67 | Y | H | -1.1869 | |
| 68 | N | H | 0.0000 | |
| 69 | E | H | -3.2913 | |
| 70 | K | H | -3.1750 | |
| 71 | F | H | 0.0000 | |
| 72 | K | H | -3.0453 | |
| 74 | T | H | -1.7964 | |
| 75 | R | H | -1.5698 | |
| 76 | A | H | 0.0000 | |
| 77 | T | H | -0.8276 | |
| 78 | L | H | 0.0000 | |
| 79 | T | H | -0.3063 | |
| 80 | V | H | -0.5312 | |
| 81 | D | H | -0.9492 | |
| 82 | N | H | -1.3703 | |
| 83 | P | H | -0.7321 | |
| 84 | S | H | -0.6962 | |
| 85 | S | H | -0.7310 | |
| 86 | T | H | 0.0000 | |
| 87 | A | H | 0.0000 | |
| 88 | Y | H | -0.1722 | |
| 89 | M | H | 0.0000 | |
| 90 | Q | H | -1.0754 | |
| 91 | L | H | 0.0000 | |
| 92 | S | H | -0.8877 | |
| 93 | S | H | -0.8705 | |
| 94 | L | H | 0.0000 | |
| 95 | T | H | -1.2548 | |
| 96 | S | H | -1.4116 | |
| 97 | D | H | -2.0080 | |
| 98 | D | H | 0.0000 | |
| 99 | S | H | -0.6440 | |
| 100 | A | H | 0.0000 | |
| 101 | V | H | -0.0333 | |
| 102 | Y | H | 0.0000 | |
| 103 | Y | H | 0.0000 | |
| 104 | C | H | 0.0000 | |
| 105 | A | H | 0.0000 | |
| 106 | R | H | 0.0000 | |
| 107 | R | H | 0.0930 | |
| 108 | A | H | 0.3428 | |
| 109 | Y | H | 0.9938 | |
| 110 | Y | H | 1.3736 | |
| 111 | S | H | 0.2627 | |
| 112 | R | H | -0.3853 | |
| 113 | N | H | 0.0000 | |
| 114 | A | H | 0.0000 | |
| 115 | L | H | 0.0000 | |
| 116 | D | H | -0.2243 | |
| 117 | Y | H | 0.0774 | |
| 118 | W | H | -0.3002 | |
| 119 | G | H | 0.0000 | |
| 120 | Q | H | -1.3524 | |
| 121 | G | H | 0.0000 | |
| 122 | T | H | 0.0000 | |
| 123 | S | H | -0.1289 | |
| 124 | V | H | 0.0000 | |
| 125 | T | H | 0.0627 | |
| 126 | V | H | 0.0000 | |
| 127 | S | H | -0.3277 | |
| 128 | A | H | -0.3564 | |
| 3 | V | L | 1.2301 | |
| 4 | L | L | 0.0000 | |
| 5 | T | L | -0.2197 | |
| 6 | Q | L | 0.0000 | |
| 7 | S | L | 0.0064 | |
| 8 | P | L | 0.4840 | |
| 9 | L | L | 1.4117 | |
| 10 | S | L | 0.5440 | |
| 11 | L | L | 0.1953 | |
| 12 | P | L | -0.3162 | |
| 13 | V | L | 0.0000 | |
| 14 | T | L | -0.8213 | |
| 15 | L | L | -0.4060 | |
| 16 | G | L | -1.2142 | |
| 17 | Q | L | -1.8023 | |
| 18 | P | L | -1.7607 | |
| 19 | A | L | 0.0000 | |
| 20 | S | L | -0.7108 | |
| 21 | I | L | 0.0000 | |
| 22 | S | L | -0.7430 | |
| 23 | C | L | 0.0000 | |
| 24 | R | L | -1.9661 | |
| 25 | S | L | -1.0336 | |
| 26 | S | L | -0.7076 | |
| 27 | Q | L | -1.1434 | |
| 28 | S | L | -0.6241 | |
| 29 | L | L | 0.0000 | |
| 30 | V | L | 0.7908 | |
| 31 | F | L | 0.5457 | |
| 32 | S | L | -0.5091 | |
| 34 | D | L | -1.7217 | |
| 35 | G | L | -0.9342 | |
| 36 | N | L | -0.5939 | |
| 37 | T | L | 0.0744 | |
| 38 | Y | L | 0.0000 | |
| 39 | L | L | 0.0000 | |
| 40 | H | L | 0.0000 | |
| 41 | W | L | 0.0000 | |
| 42 | F | L | 0.0000 | |
| 43 | Q | L | 0.0000 | |
| 44 | Q | L | -0.7120 | |
| 45 | R | L | -1.4316 | |
| 46 | P | L | -0.9038 | |
| 47 | G | L | -1.1701 | |
| 48 | Q | L | -1.3685 | |
| 49 | P | L | -0.8890 | |
| 50 | P | L | 0.0000 | |
| 51 | R | L | -0.8057 | |
| 52 | R | L | 0.0000 | |
| 53 | L | L | 0.0000 | |
| 54 | I | L | 0.0000 | |
| 55 | Y | L | -0.5964 | |
| 56 | Q | L | -0.4918 | |
| 57 | V | L | -0.5358 | |
| 65 | S | L | -0.7476 | |
| 66 | N | L | -1.1911 | |
| 67 | R | L | -1.6259 | |
| 68 | D | L | -1.1276 | |
| 69 | S | L | -0.7852 | |
| 70 | G | L | -0.8893 | |
| 71 | V | L | -1.0029 | |
| 72 | P | L | -1.1754 | |
| 74 | D | L | -2.2241 | |
| 75 | R | L | 0.0000 | |
| 76 | F | L | 0.0000 | |
| 77 | S | L | -1.2909 | |
| 78 | G | L | 0.0000 | |
| 79 | S | L | -0.8536 | |
| 80 | G | L | -1.0025 | |
| 83 | S | L | -0.7052 | |
| 84 | G | L | -0.6102 | |
| 85 | T | L | -1.4024 | |
| 86 | D | L | -1.8419 | |
| 87 | F | L | 0.0000 | |
| 88 | T | L | -0.9696 | |
| 89 | L | L | 0.0000 | |
| 90 | K | L | -1.6636 | |
| 91 | I | L | 0.0000 | |
| 92 | S | L | -2.1422 | |
| 93 | R | L | -2.8755 | |
| 94 | V | L | 0.0000 | |
| 95 | E | L | -1.9994 | |
| 96 | A | L | -0.9042 | |
| 97 | E | L | -2.0640 | |
| 98 | D | L | 0.0000 | |
| 99 | V | L | -0.0482 | |
| 100 | G | L | 0.0000 | |
| 101 | V | L | 0.4315 | |
| 102 | Y | L | 0.0000 | |
| 103 | Y | L | 0.0000 | |
| 104 | C | L | 0.0000 | |
| 105 | M | L | 0.0000 | |
| 106 | Q | L | 0.0000 | |
| 107 | A | L | 0.0000 | |
| 108 | L | L | 0.5838 | |
| 109 | Q | L | 0.1656 | |
| 114 | V | L | 1.1791 | |
| 115 | H | L | -0.0870 | |
| 116 | S | L | 0.0000 | |
| 117 | T | L | 0.2571 | |
| 118 | F | L | 0.0000 | |
| 119 | G | L | 0.0000 | |
| 120 | P | L | -0.1160 | |
| 121 | G | L | 0.0000 | |
| 122 | T | L | 0.0000 | |
| 123 | T | L | 0.5306 | |
| 124 | V | L | 0.0000 | |
| 125 | D | L | -0.0122 | |
| 126 | I | L | 0.0573 | |
| 127 | K | L | -1.2919 |