Project name: girbi

Status: done

Started: 2025-02-26 09:02:58
Settings
Chain sequence(s) A: SIEKIWAREILDSRGNPTVEVDLYTAKGLFRAAVPSGASTGIYEALELRDGDKQRYLGKGVLKAVDHINSTIAPALISSGLSVVEQEKLDNLMLELDGTENKSKFGANAILGVSLAVCKAGAAERELPLYRHIAQLAGNSDLILPVPAFNVINGGSHAGNKLAMQEFMILPVGAESFRDAMRLGAEVYHTLKGVIKDKYGKDATNVGDEGGFAPNILENSEALELVKEAIDKAGYTEKIVIGMDVAASEFYRDGKYDLDFKSPTDPSRYITGDQLGALYQDFVRDYPVVSIEDPFDQDDWAAWSKFTANVGIQIVGDDLTVTNPKRIERAVEEKACNCLLLKVNQIGSVTEAIQACKLAQENGWGVMVSHRSGETEDTFIADLVVGLCTGQIKTGAPCRSERLAKYNQLMRIEEELGDEARFAGHNFRNPSVLH
B: SIEKIWAREILDSRGNPTVEVDLYTAKGLFRAAVPSGASTGIYEALELRDGDKQRYLGKGVLKAVDHINSTIAPALISSGLSVVEQEKLDNLMLELDGTENKSKFGANAILGVSLAVCKAGAAERELPLYRHIAQLAGNSDLILPVPAFNVINGGSHAGNKLAMQEFMILPVGAESFRDAMRLGAEVYHTLKGVIKDKYGKDATNVGDEGGFAPNILENSEALELVKEAIDKAGYTEKIVIGMDVAASEFYRDGKYDLDFKSPTDPSRYITGDQLGALYQDFVRDYPVVSIEDPFDQDDWAAWSKFTANVGIQIVGDDLTVTNPKRIERAVEEKACNCLLLKVNQIGSVTEAIQACKLAQENGWGVMVSHRSGETEDTFIADLVVGLCTGQIKTGAPCRSERLAKYNQLMRIEEELGDEARFAGHNFRNPSVL
input PDB
Selected Chain(s) A,B
Distance of aggregation 10 Å
FoldX usage Yes
Dynamic mode No
Automated mutations No
Downloads Download all the data
Simulation log
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:07)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:07)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with all chain(s) selected           (00:00:07)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:07)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:00:07)
[INFO]       Analysis: Starting Aggrescan3D on folded.pdb                                          (00:12:09)
[INFO]       Main:     Simulation completed successfully.                                          (00:12:17)
Show buried residues

Minimal score value
-4.0588
Maximal score value
2.1433
Average score
-0.6952
Total score value
-602.7527

The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan3D score mutation
residue index residue name chain Aggrescan3D score
mutation
1 S A -0.8006
2 I A 0.0000
3 E A -2.4456
4 K A -2.0976
5 I A 0.0000
6 W A -0.0928
7 A A 0.0000
8 R A 0.0000
9 E A -0.3395
10 I A 0.0000
11 L A 0.0000
12 D A 0.0000
13 S A 0.0000
14 R A -0.3214
15 G A 0.0000
16 N A 0.0000
17 P A 0.0000
18 T A 0.0000
19 V A 0.0000
20 E A 0.0000
21 V A 0.0000
22 D A 0.0000
23 L A 0.0000
24 Y A -0.5121
25 T A 0.0000
26 A A -0.6148
27 K A -0.9250
28 G A -0.1947
29 L A 0.5380
30 F A 0.2539
31 R A -0.2546
32 A A 0.0000
33 A A 0.0000
34 V A 0.0000
35 P A -0.1052
36 S A 0.0000
37 G A -0.1669
38 A A -0.1116
39 S A 0.0000
40 T A 0.3525
41 G A 0.0000
42 I A 2.1433
43 Y A 1.2243
44 E A 0.5531
45 A A -0.1486
46 L A -0.1228
47 E A -0.5867
48 L A -0.8682
49 R A -1.4257
50 D A -2.1062
51 G A -2.4680
52 D A -3.1833
53 K A -3.1068
54 Q A -2.5976
55 R A -2.0617
56 Y A 0.0000
57 L A -1.1147
58 G A -2.2843
59 K A -1.6429
60 G A 0.0000
61 V A 0.0000
62 L A -0.9445
63 K A -2.3535
64 A A 0.0000
65 V A 0.0000
66 D A -2.3091
67 H A -1.6538
68 I A 0.0000
69 N A -1.0680
70 S A -0.8976
71 T A -0.5605
72 I A 0.0000
73 A A 0.0000
74 P A -0.5778
75 A A 0.0639
76 L A 0.0000
77 I A -0.4032
78 S A -0.2780
79 S A -0.2902
80 G A -0.4866
81 L A -0.4277
82 S A -0.5081
83 V A 0.0000
84 V A -1.1568
85 E A -1.8402
86 Q A 0.0000
87 E A -2.7711
88 K A -2.8862
89 L A 0.0000
90 D A 0.0000
91 N A -2.1537
92 L A -1.3501
93 M A 0.0000
94 L A -1.3800
95 E A -2.0002
96 L A -0.7207
97 D A 0.0000
98 G A -1.6839
99 T A -1.9097
100 E A -2.5696
101 N A -1.7867
102 K A 0.0000
103 S A -1.3691
104 K A -1.8460
105 F A 0.0000
106 G A 0.0000
107 A A 0.0000
108 N A 0.0000
109 A A 0.0000
110 I A 0.0000
111 L A 0.0000
112 G A 0.0000
113 V A 0.0000
114 S A 0.0000
115 L A 0.0000
116 A A 0.0000
117 V A 0.0000
118 C A 0.0000
119 K A -0.0938
120 A A 0.0000
121 G A 0.0000
122 A A 0.0000
123 A A -1.3891
124 E A -1.8898
125 R A -2.5872
126 E A -2.4735
127 L A -0.6388
128 P A -0.4656
129 L A -0.1511
130 Y A 0.0000
131 R A -0.8920
132 H A 0.0000
133 I A 0.0000
134 A A 0.0000
135 Q A -1.4851
136 L A -0.8964
137 A A 0.0000
138 G A -1.2053
139 N A -1.4800
140 S A -1.6981
141 D A -2.7202
142 L A 0.0000
143 I A 0.0000
144 L A 0.0000
145 P A 0.0000
146 V A 0.0000
147 P A 0.0000
148 A A 0.0000
149 F A 0.0000
150 N A 0.0000
151 V A 0.0000
152 I A 0.0000
153 N A 0.0000
154 G A 0.0000
155 G A 0.0000
156 S A -0.2606
157 H A 0.0000
158 A A -0.6165
159 G A 0.0000
160 N A 0.0000
161 K A -1.3124
162 L A 0.0000
163 A A 0.0000
164 M A 0.0000
165 Q A 0.0000
166 E A 0.0000
167 F A 0.0000
168 M A 0.0000
169 I A 0.0000
170 L A 0.0000
171 P A 0.0000
172 V A 0.0000
173 G A -1.6625
174 A A 0.0000
175 E A -2.4146
176 S A -1.7090
177 F A 0.0000
178 R A -1.5784
179 D A -1.5279
180 A A 0.0000
181 M A 0.0000
182 R A -0.8192
183 L A 0.0000
184 G A 0.0000
185 A A 0.0000
186 E A 0.0000
187 V A 0.0000
188 Y A 0.0000
189 H A -0.3966
190 T A -1.0359
191 L A 0.0000
192 K A -1.5662
193 G A -1.7720
194 V A 0.0000
195 I A 0.0000
196 K A -3.1953
197 D A -3.3321
198 K A -2.8810
199 Y A -2.0980
200 G A -2.5360
201 K A -2.6046
202 D A -2.8323
203 A A 0.0000
204 T A 0.0000
205 N A -1.0610
206 V A 0.0000
207 G A 0.0000
208 D A -0.3060
209 E A 0.0000
210 G A 0.0000
211 G A 0.0000
212 F A 0.0000
213 A A 0.0000
214 P A 0.0000
215 N A -2.0305
216 I A 0.0000
217 L A -0.7326
218 E A -1.9266
219 N A 0.0000
220 S A -1.3054
221 E A -1.3468
222 A A 0.0000
223 L A 0.0000
224 E A -2.4045
225 L A 0.0000
226 V A 0.0000
227 K A -2.0061
228 E A -2.8411
229 A A 0.0000
230 I A 0.0000
231 D A -2.8775
232 K A -2.7563
233 A A -1.7135
234 G A -1.8477
235 Y A -1.5623
236 T A -2.1596
237 E A -2.5164
238 K A -2.4369
239 I A 0.0000
240 V A -0.5773
241 I A 0.0000
242 G A 0.0000
243 M A 0.0000
244 D A 0.0000
245 V A 0.0000
246 A A 0.0000
247 A A 0.0000
248 S A -0.1737
249 E A -0.3670
250 F A 0.0000
251 Y A -0.8314
252 R A -1.6834
253 D A -2.4528
254 G A -1.8962
255 K A -1.9304
256 Y A 0.0000
257 D A 0.0000
258 L A -0.1098
259 D A -0.4968
260 F A -0.3324
261 K A -0.3739
262 S A -0.5603
263 P A -0.5983
264 T A -0.7994
265 D A -1.3314
266 P A -1.2560
267 S A -0.7578
268 R A -0.7510
269 Y A -0.8076
270 I A -0.6421
271 T A -1.3772
272 G A -1.4282
273 D A -2.5014
274 Q A -1.8245
275 L A 0.0000
276 G A -1.4631
277 A A -0.9851
278 L A -0.6652
279 Y A 0.0000
280 Q A -1.6152
281 D A -1.9404
282 F A 0.0000
283 V A -1.2702
284 R A -2.8707
285 D A -2.9716
286 Y A -1.5957
287 P A -0.7935
288 V A 0.0000
289 V A 0.4237
290 S A 0.0000
291 I A 0.0000
292 E A 0.0000
293 D A 0.0000
294 P A 0.0000
295 F A 0.0000
296 D A 0.0000
297 Q A 0.0000
298 D A -1.1316
299 D A -0.9652
300 W A 0.0000
301 A A -1.0801
302 A A -1.1637
303 W A 0.0000
304 S A -2.1371
305 K A -2.5727
306 F A 0.0000
307 T A -1.3064
308 A A -1.4345
309 N A -1.6856
310 V A -0.7093
311 G A -0.3970
312 I A -0.0437
313 Q A 0.0000
314 I A 0.0000
315 V A 0.0000
316 G A 0.0000
317 D A 0.0000
318 D A 0.0000
319 L A 0.0000
320 T A 0.0000
321 V A 0.0000
322 T A 0.0000
323 N A -1.2209
324 P A -2.0495
325 K A -2.8046
326 R A -2.0629
327 I A 0.0000
328 E A -4.0193
329 R A -4.0153
330 A A 0.0000
331 V A -3.1597
332 E A -4.0588
333 E A -4.0422
334 K A -3.7137
335 A A 0.0000
336 C A 0.0000
337 N A -1.0946
338 C A 0.0000
339 L A 0.0000
340 L A 0.0000
341 L A 0.0000
342 K A 0.0000
343 V A 0.0000
344 N A 0.0000
345 Q A 0.0000
346 I A 0.0000
347 G A 0.0000
348 S A 0.0000
349 V A 0.0000
350 T A -1.1821
351 E A -1.1424
352 A A 0.0000
353 I A 0.0000
354 Q A -1.4374
355 A A 0.0000
356 C A 0.0000
357 K A -2.1752
358 L A -1.8357
359 A A 0.0000
360 Q A -2.5539
361 E A -2.7682
362 N A -2.4639
363 G A -1.9600
364 W A 0.0000
365 G A 0.0000
366 V A 0.0000
367 M A 0.0000
368 V A 0.0000
369 S A 0.0000
370 H A 0.0000
371 R A 0.0000
372 S A 0.0000
373 G A 0.0000
374 E A 0.0000
375 T A 0.0000
376 E A -0.5063
377 D A -0.4948
378 T A -0.2385
379 F A 0.0000
380 I A 0.0000
381 A A 0.0000
382 D A 0.0000
383 L A 0.0000
384 V A 0.0000
385 V A 0.0000
386 G A 0.0000
387 L A 0.0000
388 C A -0.5063
389 T A 0.0000
390 G A 0.0000
391 Q A 0.0000
392 I A 0.0000
393 K A 0.0000
394 T A 0.0000
395 G A 0.0000
396 A A 0.0000
397 P A 0.0000
398 C A 0.0000
399 R A 0.0000
400 S A 0.0000
401 E A 0.0000
402 R A 0.0000
403 L A 0.0000
404 A A 0.0000
405 K A 0.0000
406 Y A 0.0000
407 N A 0.0000
408 Q A -0.3414
409 L A 0.0000
410 M A 0.0000
411 R A -1.1747
412 I A 0.0000
413 E A -2.1214
414 E A -2.2928
415 E A -2.8088
416 L A 0.0000
417 G A -2.9802
418 D A -3.5833
419 E A -3.8591
420 A A -3.1984
421 R A -3.1317
422 F A -1.4048
423 A A 0.0000
424 G A -1.4463
425 H A -1.6739
426 N A -1.3301
427 F A 0.0000
428 R A -1.8505
429 N A -1.6947
430 P A 0.0000
431 S A -0.4056
432 V A 1.0827
433 L A -0.2619
434 H A -1.1233
1 S B -0.8448
2 I B 0.0000
3 E B -2.4397
4 K B -2.0695
5 I B 0.0000
6 W B -0.1597
7 A B 0.0000
8 R B 0.0000
9 E B -0.3092
10 I B 0.0000
11 L B 0.0000
12 D B 0.0000
13 S B 0.0000
14 R B -0.7007
15 G B 0.0000
16 N B 0.0000
17 P B 0.0000
18 T B 0.0000
19 V B 0.0000
20 E B 0.0000
21 V B 0.0000
22 D B 0.0000
23 L B 0.0000
24 Y B -0.5186
25 T B 0.0000
26 A B -0.6415
27 K B -1.1338
28 G B -0.0939
29 L B 0.5218
30 F B 0.1956
31 R B -0.6057
32 A B 0.0000
33 A B 0.0000
34 V B 0.0000
35 P B -0.2168
36 S B -0.2704
37 G B -0.2029
38 A B -0.1797
39 S B -0.3678
40 T B 0.1822
41 G B 0.7371
42 I B 1.8052
43 Y B 0.5516
44 E B 0.0164
45 A B 0.0000
46 L B -0.1314
47 E B 0.0000
48 L B -0.6130
49 R B -1.1495
50 D B -1.7594
51 G B -2.0664
52 D B -2.5217
53 K B -2.8350
54 Q B -2.3852
55 R B -1.8252
56 Y B 0.0000
57 L B -1.0335
58 G B -2.0888
59 K B -1.6817
60 G B 0.0000
61 V B 0.0000
62 L B -0.7672
63 K B -2.0080
64 A B 0.0000
65 V B -0.9925
66 D B -2.1910
67 H B -1.5236
68 I B 0.0000
69 N B -1.2254
70 S B -0.8900
71 T B -0.5494
72 I B 0.0000
73 A B 0.0000
74 P B -0.5745
75 A B 0.0528
76 L B 0.0000
77 I B -0.4399
78 S B -0.3119
79 S B -0.3073
80 G B -0.5623
81 L B -0.3364
82 S B -0.3772
83 V B 0.0000
84 V B -0.8352
85 E B -1.2444
86 Q B 0.0000
87 E B -2.5662
88 K B -2.6382
89 L B 0.0000
90 D B 0.0000
91 N B -2.1114
92 L B -1.1535
93 M B 0.0000
94 L B -1.2426
95 E B -1.9310
96 L B -0.6720
97 D B 0.0000
98 G B -1.5835
99 T B -1.7377
100 E B -2.1344
101 N B -1.0243
102 K B 0.0000
103 S B -1.1532
104 K B -1.5067
105 F B 0.0000
106 G B 0.0000
107 A B 0.0000
108 N B 0.0000
109 A B 0.0000
110 I B 0.0000
111 L B 0.0000
112 G B 0.0000
113 V B 0.0000
114 S B 0.0000
115 L B 0.0000
116 A B 0.0000
117 V B 0.0000
118 C B 0.0000
119 K B -0.1996
120 A B 0.0000
121 G B 0.0000
122 A B 0.0000
123 A B -1.5793
124 E B -2.1369
125 R B -2.7908
126 E B -2.7730
127 L B -1.2518
128 P B -0.9222
129 L B -0.5361
130 Y B 0.0000
131 R B -1.6538
132 H B 0.0000
133 I B 0.0000
134 A B 0.0000
135 Q B -1.6705
136 L B -0.9701
137 A B 0.0000
138 G B -1.3290
139 N B -1.5769
140 S B -1.7304
141 D B -2.2472
142 L B -1.3996
143 I B 0.0000
144 L B 0.0000
145 P B 0.0000
146 V B 0.0000
147 P B 0.0000
148 A B 0.0000
149 F B 0.0000
150 N B 0.0000
151 V B 0.0000
152 I B 0.0000
153 N B 0.0000
154 G B 0.0000
155 G B 0.0000
156 S B -0.7410
157 H B -0.5062
158 A B 0.0000
159 G B -1.8612
160 N B 0.0000
161 K B -1.3345
162 L B 0.0000
163 A B 0.0000
164 M B 0.0000
165 Q B -0.3860
166 E B 0.0000
167 F B 0.0000
168 M B 0.0000
169 I B 0.0000
170 L B 0.0000
171 P B 0.0000
172 V B 0.0000
173 G B -1.4267
174 A B 0.0000
175 E B -2.2987
176 S B -1.6087
177 F B 0.0000
178 R B -1.3443
179 D B -1.2706
180 A B 0.0000
181 M B 0.0000
182 R B -0.5175
183 L B 0.0000
184 G B 0.0000
185 A B 0.0000
186 E B 0.0000
187 V B 0.0000
188 Y B 0.0000
189 H B -0.3579
190 T B -1.0865
191 L B 0.0000
192 K B -1.3371
193 G B -1.6805
194 V B 0.0000
195 I B 0.0000
196 K B -3.0485
197 D B -3.3071
198 K B -2.9009
199 Y B -2.0859
200 G B -2.1331
201 K B -2.4158
202 D B -2.4081
203 A B 0.0000
204 T B 0.0000
205 N B 0.0000
206 V B 0.0000
207 G B -0.6254
208 D B -0.8213
209 E B 0.0000
210 G B 0.0000
211 G B 0.0000
212 F B 0.0000
213 A B -0.6906
214 P B 0.0000
215 N B -1.8016
216 I B 0.0000
217 L B -1.0133
218 E B -2.1833
219 N B 0.0000
220 S B -1.6696
221 E B -1.8857
222 A B 0.0000
223 L B 0.0000
224 E B -2.8077
225 L B 0.0000
226 V B 0.0000
227 K B -2.7060
228 E B -3.2980
229 A B 0.0000
230 I B 0.0000
231 D B -3.7890
232 K B -3.2266
233 A B -1.9780
234 G B -2.1829
235 Y B 0.0000
236 T B -2.4584
237 E B -2.4317
238 K B -1.9923
239 I B 0.0000
240 V B -0.3254
241 I B 0.0000
242 G B 0.0000
243 M B 0.0000
244 D B 0.0000
245 V B 0.0000
246 A B -0.5475
247 A B 0.0000
248 S B -1.0503
249 E B -1.1806
250 F B 0.0000
251 Y B -0.8910
252 R B -1.7657
253 D B -2.4520
254 G B -1.7889
255 K B -1.9453
256 Y B 0.0000
257 D B 0.0000
258 L B -0.2151
259 D B -0.7414
260 F B -0.6556
261 K B -0.6827
262 S B -0.6818
263 P B -0.6689
264 T B -0.8774
265 D B -1.4011
266 P B -1.3441
267 S B -0.8083
268 R B -0.8298
269 Y B -0.9047
270 I B -0.7313
271 T B -1.2472
272 G B -1.6467
273 D B -2.6212
274 Q B -2.0534
275 L B 0.0000
276 G B -1.5958
277 A B -1.2530
278 L B -0.9994
279 Y B 0.0000
280 Q B -1.9495
281 D B -2.5597
282 F B 0.0000
283 V B -1.5390
284 R B -3.0989
285 D B -3.1756
286 Y B -1.7284
287 P B -0.7653
288 V B 0.0000
289 V B 0.3817
290 S B 0.0000
291 I B 0.0000
292 E B 0.0000
293 D B 0.0000
294 P B 0.0000
295 F B 0.0000
296 D B 0.0000
297 Q B -1.5723
298 D B -2.1600
299 D B -1.3612
300 W B 0.0000
301 A B -0.8995
302 A B -1.2491
303 W B 0.0000
304 S B -2.0183
305 K B -2.5380
306 F B 0.0000
307 T B -1.3026
308 A B -1.4181
309 N B -1.6774
310 V B -0.7407
311 G B -0.4446
312 I B 0.0000
313 Q B 0.0000
314 I B 0.0000
315 V B 0.0000
316 G B 0.0000
317 D B -0.6142
318 D B -1.1337
319 L B 0.0000
320 T B 0.0000
321 V B 0.0000
322 T B 0.0000
323 N B -1.2575
324 P B -1.8084
325 K B -2.6242
326 R B 0.0000
327 I B 0.0000
328 E B -3.7669
329 R B -3.5119
330 A B 0.0000
331 V B -2.9887
332 E B -3.6326
333 E B -3.2936
334 K B -3.2844
335 A B 0.0000
336 C B 0.0000
337 N B -0.9550
338 C B 0.0000
339 L B 0.0000
340 L B 0.0000
341 L B 0.0000
342 K B 0.0000
343 V B 0.0000
344 N B 0.0000
345 Q B 0.0000
346 I B 0.0000
347 G B 0.0000
348 S B 0.0000
349 V B 0.0000
350 T B -1.2731
351 E B -1.2684
352 A B 0.0000
353 I B 0.0000
354 Q B -1.6102
355 A B 0.0000
356 C B 0.0000
357 K B -2.1127
358 L B -1.7799
359 A B 0.0000
360 Q B -2.4426
361 E B -2.8237
362 N B -2.6408
363 G B -1.9668
364 W B 0.0000
365 G B 0.0000
366 V B 0.0000
367 M B 0.0000
368 V B 0.0000
369 S B 0.0000
370 H B 0.0000
371 R B -0.4030
372 S B -0.4831
373 G B 0.0000
374 E B 0.0000
375 T B 0.0000
376 E B -0.4485
377 D B -0.4906
378 T B -0.1540
379 F B 0.0000
380 I B 0.1435
381 A B 0.0000
382 D B 0.0000
383 L B 0.0000
384 V B 0.0000
385 V B 0.0000
386 G B 0.0000
387 L B 0.0000
388 C B -0.4265
389 T B 0.0000
390 G B 0.0000
391 Q B 0.0000
392 I B 0.0000
393 K B 0.0000
394 T B 0.0000
395 G B 0.0000
396 A B 0.0000
397 P B 0.0000
398 C B 0.0000
399 R B 0.0000
400 S B 0.0000
401 E B 0.0000
402 R B 0.0000
403 L B 0.0000
404 A B 0.0000
405 K B 0.0000
406 Y B 0.0000
407 N B 0.0000
408 Q B -0.1892
409 L B 0.0000
410 M B 0.0000
411 R B 0.0000
412 I B 0.0000
413 E B 0.0000
414 E B -1.9729
415 E B -2.5616
416 L B -2.3559
417 G B -2.7878
418 D B -3.4486
419 E B -3.7409
420 A B -2.9665
421 R B -2.6860
422 F B -1.1419
423 A B 0.0000
424 G B 0.0000
425 H B -1.4748
426 N B -0.8383
427 F B 0.0000
428 R B -1.4209
429 N B -1.1500
430 P B -0.2648
431 S B 0.2728
432 V B 2.0332
433 L B 1.6161
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Laboratory of Theory of Biopolymers 2018