Project name: steven zhao [mutate: LK81A]

Status: done

Started: 2025-02-02 15:59:28
Settings
Chain sequence(s) A: GSSLDDFCNDSTAPQKVLLAFSITYTPVMIYALKVSRGRLLGLLHLLIFLNCAFTFGYMTFVHFESTNRVALTMGAVVALLWGVYSAIET
B: SNNNSSHIQLIYNLTLCELNGTDWLAQKFDWAVETFVIFPVLTHIVSYGALTTSHFLDTVGLATVSTAGYYHGRYVLSSIYAVCALAALICFVIR
input PDB
Selected Chain(s) A,B
Distance of aggregation 10 Å
FoldX usage Yes
Dynamic mode No
Automated mutations No
Mutated residues LK81A
Energy difference between WT (input) and mutated protein (by FoldX) 0.317412 kcal/mol
Downloads Download all the data
Simulation log
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:01)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:01)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with all chain(s) selected           (00:00:01)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:01)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:00:01)
[INFO]       FoldX:    Building mutant model                                                       (00:01:15)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:01:49)
[INFO]       Analysis: Starting Aggrescan3D on folded.pdb                                          (00:02:54)
[INFO]       Main:     Simulation completed successfully.                                          (00:02:56)
Show buried residues

Minimal score value
-2.8972
Maximal score value
3.4383
Average score
0.4437
Total score value
82.0862

The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan3D score mutation
residue index residue name chain Aggrescan3D score
mutation
1 G A -0.9377
2 S A -1.2230
3 S A -1.5528
4 L A 0.0000
5 D A -1.8004
6 D A -2.3415
7 F A 0.0000
8 C A -1.7135
9 N A -2.4013
10 D A -2.3984
11 S A -1.3539
12 T A -1.3838
13 A A -1.0920
14 P A -0.9053
15 Q A -1.2322
16 K A -1.3772
17 V A 0.0000
18 L A 1.0427
19 L A 0.0000
20 A A 0.0000
21 F A 1.0839
22 S A 0.0000
23 I A 0.0000
24 T A 0.0000
25 Y A 0.5778
26 T A 0.0000
27 P A 0.0000
28 V A 0.5353
29 M A 0.5272
30 I A 0.0000
31 Y A 0.0000
32 A A 0.3562
33 L A 0.0000
34 K A 0.0000
35 V A 0.4185
36 S A 0.0000
37 R A -1.7170
38 G A -1.1585
39 R A -1.8170
40 L A 0.1934
41 L A 1.8126
42 G A 1.3353
43 L A 2.7400
44 L A 2.5180
45 H A 0.0000
46 L A 2.6300
47 L A 2.4254
48 I A 0.0000
49 F A 1.7635
50 L A 2.0259
51 N A 1.3138
52 C A 0.0000
53 A A 1.2442
54 F A 1.0381
55 T A 0.0000
56 F A 1.0697
57 G A 0.9720
58 Y A 0.9711
59 M A 0.0000
60 T A 0.7383
61 F A 0.9635
62 V A 0.0000
63 H A -1.0016
64 F A 0.2528
65 E A -1.5228
66 S A -0.8449
67 T A -0.1682
68 N A -0.3048
69 R A -0.4580
70 V A 1.5500
71 A A 1.2748
72 L A 2.2255
73 T A 1.5313
74 M A 2.0239
75 G A 1.7687
76 A A 1.7316
77 V A 1.9487
78 V A 1.8547
79 A A 1.7916
80 L A 1.9554
81 K A 0.5205 mutated: LK81A
82 W A 1.1816
83 G A 1.9811
84 V A 2.4121
85 Y A 2.0134
86 S A 1.5023
87 A A 1.7867
88 I A 2.3932
89 E A 0.3505
90 T A -0.3020
1 S B -1.6977
2 N B -2.5921
3 N B -2.8972
4 N B -2.7175
5 S B -1.9981
6 S B -1.7002
7 H B -1.5677
8 I B -0.7749
9 Q B -0.7695
10 L B 0.6957
11 I B 0.8159
12 Y B 0.0000
13 N B -0.0535
14 L B 0.7874
15 T B 0.0000
16 L B 0.0000
17 C B 0.0000
18 E B -0.7677
19 L B 0.0000
20 N B -1.2108
21 G B -1.1685
22 T B -1.2459
23 D B -1.9431
24 W B -0.7772
25 L B 0.0000
26 A B -1.6712
27 Q B -1.9180
28 K B -1.4734
29 F B 0.0000
30 D B -2.1883
31 W B -0.3859
32 A B 0.0000
33 V B 0.0000
34 E B -0.8170
35 T B 0.0605
36 F B 0.4456
37 V B 0.0000
38 I B 1.1682
39 F B 1.2550
40 P B 0.0000
41 V B 1.7982
42 L B 2.4585
43 T B 0.0000
44 H B 1.8244
45 I B 2.7370
46 V B 2.1646
47 S B 0.0000
48 Y B 1.8656
49 G B 0.7535
50 A B 0.7251
51 L B 0.9388
52 T B 0.8531
53 T B 0.8550
54 S B 0.0000
55 H B 0.0000
56 F B 2.4591
57 L B 1.9073
58 D B 0.0000
59 T B 1.9720
60 V B 1.8256
61 G B 0.9633
62 L B 0.0000
63 A B 0.9889
64 T B 0.3434
65 V B 0.5174
66 S B 1.2584
67 T B 0.8499
68 A B 0.0000
69 G B 0.0000
70 Y B 2.1481
71 Y B 1.7835
72 H B 0.6252
73 G B 0.6125
74 R B 0.7289
75 Y B 2.2111
76 V B 2.0778
77 L B 0.0000
78 S B 0.0000
79 S B 1.5752
80 I B 1.7087
81 Y B 0.0000
82 A B 1.8655
83 V B 2.5384
84 C B 1.8278
85 A B 2.1528
86 L B 2.7854
87 A B 2.1615
88 A B 0.0000
89 L B 3.4377
90 I B 3.2759
91 C B 2.6752
92 F B 3.0966
93 V B 3.4383
94 I B 2.7337
95 R B 0.3354
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Laboratory of Theory of Biopolymers 2018