Project name: Lad-EAAAKEAAAK-SnapTag

Status: done

Started: 2025-06-30 19:25:49
Settings
Chain sequence(s) A: QVQLVQSGAEVKKPGASVKVSCKASGLTIEDYYMHWVRQAPGQGLEWMGWIDPENGDTEYGPKFQGRVTMTRDTSINTAYMELSRLRSDDTAVYYCAVHNAHYGTWFAYWGQGTLVTVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKKVEPKSCEAAAKEAAAKDKDCEMKRTTLDSPLGKLELSGCEQGLHEIIFLGKGTSAADAVEVPAPAAVLGGPEPLMQATAWLNAYFHQPEAIEEFPVPALHHPVFQQESFTRQVLWKLLKVVKFGEVISYSHLAALAGNPAATAAVKTALSGNPVPILIPCHRVVQGDLDVGGYEGGLAVKEWLLAHEGHRLGKPGLG
B: DVVMTQSPLSLPVTLGQPASISCRSSQSLLHSSGNTYLEWYQQRPGQSPRPLIYKISTRFSGVPDRFSGSGSGTDFTLKISRVEAEDVGVYYCFQGSHVPYTFGGGTKVEIKRTVAAPSVFIFPPSDEQLKSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLSSPVTKSFNRGEC
input PDB
Selected Chain(s) A,B
Distance of aggregation 10 Å
FoldX usage Yes
Dynamic mode No
Automated mutations No
Downloads Download all the data
Simulation log
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:01)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:01)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with all chain(s) selected           (00:00:01)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:01)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:00:01)
[INFO]       Analysis: Starting Aggrescan3D on folded.pdb                                          (00:12:00)
[INFO]       Main:     Simulation completed successfully.                                          (00:12:07)
Show buried residues

Minimal score value
-3.7143
Maximal score value
1.3652
Average score
-0.7087
Total score value
-448.6343

The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan3D score mutation
residue index residue name chain Aggrescan3D score
mutation
1 Q A -1.5471
2 V A -1.0505
3 Q A -1.3241
4 L A 0.0000
5 V A 0.5648
6 Q A 0.0000
7 S A -0.4384
8 G A -0.4910
9 A A -0.1759
10 E A -0.5236
11 V A -0.0153
12 K A -1.3001
13 K A -2.4496
14 P A -2.3827
15 G A -2.0203
16 A A -1.5275
17 S A -1.6675
18 V A 0.0000
19 K A -1.8259
20 V A 0.0000
21 S A -0.5207
22 C A 0.0000
23 K A -0.5954
24 A A 0.0000
25 S A -0.7739
26 G A -1.0610
27 L A -0.8244
28 T A -0.8572
29 I A 0.0000
30 E A -2.6329
31 D A -2.3034
32 Y A -1.1039
33 Y A -0.5250
34 M A 0.0000
35 H A 0.0000
36 W A 0.0000
37 V A 0.0000
38 R A 0.0000
39 Q A -0.5588
40 A A -0.9610
41 P A -0.9713
42 G A -1.2120
43 Q A -1.7341
44 G A -1.0860
45 L A 0.0000
46 E A -0.6489
47 W A 0.0000
48 M A 0.0000
49 G A 0.0000
50 W A 0.0000
51 I A 0.0000
52 D A -2.1777
53 P A 0.0000
54 E A -3.5175
55 N A -3.0506
56 G A -2.5469
57 D A -2.7214
58 T A -1.3391
59 E A -0.9192
60 Y A -0.7009
61 G A 0.0000
62 P A -1.6817
63 K A -2.2468
64 F A 0.0000
65 Q A -2.1240
66 G A -1.6501
67 R A -1.7021
68 V A 0.0000
69 T A -0.7389
70 M A 0.0000
71 T A -0.9959
72 R A -1.5584
73 D A -1.0257
74 T A -0.8959
75 S A 0.0418
76 I A 0.6432
77 N A -0.3854
78 T A 0.0000
79 A A 0.0000
80 Y A -0.7315
81 M A 0.0000
82 E A -1.1951
83 L A 0.0000
84 S A -1.7756
85 R A -2.7321
86 L A 0.0000
87 R A -3.3838
88 S A -2.3282
89 D A -2.5196
90 D A 0.0000
91 T A -0.8449
92 A A 0.0000
93 V A 0.3343
94 Y A 0.0000
95 Y A 0.0000
96 C A 0.0000
97 A A 0.0000
98 V A 0.0000
99 H A 0.0000
100 N A 0.0000
101 A A -0.1303
102 H A -0.5189
103 Y A 0.8508
104 G A 0.2013
105 T A 0.0000
106 W A 0.0000
107 F A 0.0000
108 A A 0.1125
109 Y A 0.0215
110 W A -0.1139
111 G A 0.0000
112 Q A -1.1349
113 G A -0.4320
114 T A 0.0000
115 L A 0.2401
116 V A 0.0000
117 T A 0.0000
118 V A 0.0000
119 S A -1.2772
120 S A -0.9199
121 A A -0.5909
122 S A -0.6596
123 T A -0.5483
124 K A -1.1619
125 G A -1.3597
126 P A 0.0000
127 S A -0.3893
128 V A 0.0000
129 F A 0.0000
130 P A -1.1095
131 L A 0.0000
132 A A -1.2232
133 P A 0.0000
134 S A -0.9192
135 S A -0.7103
136 K A -0.8880
137 S A 0.0000
138 T A -0.6573
139 S A -0.7038
140 G A -0.8088
141 G A -0.8733
142 T A -0.6120
143 A A 0.0000
144 A A 0.0000
145 L A 0.0000
146 G A 0.0000
147 C A 0.0000
148 L A 0.0000
149 V A 0.0000
150 K A 0.0000
151 D A -0.3641
152 Y A 0.0000
153 F A 0.0000
154 P A 0.0000
155 E A -0.4310
156 P A -0.7426
157 V A -0.7713
158 T A -0.6748
159 V A -0.2280
160 S A -0.4185
161 W A 0.0000
162 N A -0.7541
163 S A -0.6567
164 G A -0.4858
165 A A -0.2225
166 L A 0.0207
167 T A -0.1556
168 S A -0.1643
169 G A -0.1921
170 V A 0.1898
171 H A -0.3141
172 T A 0.0322
173 F A 0.0000
174 P A -0.3063
175 A A 0.2323
176 V A 0.5534
177 L A 1.2650
178 Q A 0.3449
179 S A -0.0222
180 S A -0.1610
181 G A 0.0705
182 L A 0.1399
183 Y A 0.4321
184 S A 0.0000
185 L A 0.0000
186 S A 0.0000
187 S A 0.0000
188 V A 0.0000
189 V A 0.0000
190 T A -0.1141
191 V A 0.0000
192 P A -0.6081
193 S A -0.5723
194 S A -0.5744
195 S A -0.5456
196 L A -0.7526
197 G A -0.9265
198 T A -0.6556
199 Q A -1.1056
200 T A -1.0837
201 Y A 0.0000
202 I A -1.3135
203 C A 0.0000
204 N A -1.5252
205 V A 0.0000
206 N A -2.2189
207 H A 0.0000
208 K A -2.8009
209 P A -1.5999
210 S A -1.8554
211 N A -2.6098
212 T A -2.1331
213 K A -2.8148
214 V A -1.6647
215 D A -2.5528
216 K A -2.1274
217 K A -2.5338
218 V A 0.0000
219 E A -2.8405
220 P A -1.7967
221 K A -2.2326
222 S A -1.5594
223 C A -0.9773
224 E A -2.4007
225 A A -2.3231
226 A A -1.9269
227 A A -2.1732
228 K A -3.2400
229 E A -3.3071
230 A A 0.0000
231 A A -2.6735
232 A A -2.8485
233 K A -3.6611
234 D A -3.3664
235 K A -3.5464
236 D A -3.7143
237 C A 0.0000
238 E A -3.1502
239 M A -2.2733
240 K A -2.5377
241 R A -2.4769
242 T A -1.1988
243 T A -0.8059
244 L A 0.0000
245 D A -1.7969
246 S A 0.0000
247 P A -0.6882
248 L A 0.0000
249 G A -1.1116
250 K A -1.5405
251 L A 0.0000
252 E A -0.6207
253 L A 0.0000
254 S A -1.2100
255 G A 0.0000
256 C A 0.0000
257 E A -3.3386
258 Q A -2.7366
259 G A 0.0000
260 L A 0.0000
261 H A -0.8396
262 E A -0.7279
263 I A 0.0000
264 I A 0.7622
265 F A 0.3381
266 L A 0.3558
267 G A -0.8976
268 K A -1.9553
269 G A -1.4100
270 T A -1.3271
271 S A -0.9846
272 A A -0.4892
273 A A -0.5272
274 D A -1.5444
275 A A -0.4042
276 V A 0.2704
277 E A -1.2829
278 V A -0.6178
279 P A -0.6317
280 A A -0.6709
281 P A -0.2469
282 A A 0.3861
283 A A 0.7181
284 V A 1.1274
285 L A 1.3652
286 G A -0.0345
287 G A -1.4001
288 P A 0.0000
289 E A -2.4730
290 P A 0.0000
291 L A 0.0000
292 M A -0.2420
293 Q A -0.2743
294 A A 0.0000
295 T A 0.0000
296 A A 0.2386
297 W A 0.0000
298 L A 0.0000
299 N A -0.5648
300 A A 0.0000
301 Y A 0.0000
302 F A 0.0000
303 H A -1.2534
304 Q A -1.8122
305 P A -1.9312
306 E A -2.6859
307 A A -2.2602
308 I A 0.0000
309 E A -2.8149
310 E A -2.6178
311 F A -0.8767
312 P A -0.3461
313 V A 0.6322
314 P A 0.0000
315 A A -0.4391
316 L A -0.0848
317 H A 0.0000
318 H A -0.6065
319 P A -1.1128
320 V A -0.3100
321 F A 0.0000
322 Q A -1.1350
323 Q A -1.1033
324 E A -1.0660
325 S A 0.0000
326 F A 0.0000
327 T A -0.5876
328 R A -0.7476
329 Q A -0.5267
330 V A 0.0000
331 L A 0.0000
332 W A -0.2108
333 K A -0.6014
334 L A 0.0000
335 L A -0.4418
336 K A -1.4971
337 V A -0.5135
338 V A 0.0000
339 K A -1.4843
340 F A -0.8641
341 G A -1.1079
342 E A -1.3188
343 V A -0.5745
344 I A 0.0000
345 S A -0.9837
346 Y A -0.8386
347 S A -0.9977
348 H A -1.1311
349 L A 0.0000
350 A A 0.0000
351 A A -0.5266
352 L A -0.1454
353 A A 0.0000
354 G A -0.5938
355 N A -0.7818
356 P A -0.6916
357 A A -0.3643
358 A A -0.4413
359 T A -0.7610
360 A A -0.4604
361 A A -0.5264
362 V A 0.0000
363 K A -1.6363
364 T A -0.9492
365 A A 0.0000
366 L A 0.0000
367 S A -1.4697
368 G A -1.0560
369 N A -0.7708
370 P A -0.3013
371 V A 0.0000
372 P A -0.3060
373 I A 0.0000
374 L A 0.0000
375 I A 0.0000
376 P A 0.0000
377 C A 0.0000
378 H A 0.0000
379 R A 0.0000
380 V A 0.0000
381 V A 0.0000
382 Q A -1.7108
383 G A -1.2882
384 D A -1.6865
385 L A -0.1309
386 D A -0.9922
387 V A -0.6447
388 G A -0.6964
389 G A -1.1909
390 Y A -1.1910
391 E A -2.0678
392 G A -1.2898
393 G A -1.0181
394 L A -0.0434
395 A A -0.0921
396 V A 0.0000
397 K A 0.0000
398 E A -1.1396
399 W A -0.4930
400 L A 0.0000
401 L A 0.0000
402 A A -1.2902
403 H A -0.6185
404 E A 0.0000
405 G A -1.3178
406 H A -1.7034
407 R A -2.5865
408 L A -1.5480
409 G A -1.7119
410 K A -1.9408
411 P A -1.0820
412 G A -0.3702
413 L A 0.8123
414 G A 0.1212
1 D B -1.3526
2 V B 0.0000
3 V B 0.6940
4 M B 0.0000
5 T B -0.4163
6 Q B 0.0000
7 S B -0.1896
8 P B 0.3803
9 L B 1.1957
10 S B 0.3588
11 L B -0.0042
12 P B -0.8136
13 V B 0.0000
14 T B -1.0414
15 L B -0.5699
16 G B -1.1691
17 Q B -1.4722
18 P B -1.7353
19 A B 0.0000
20 S B -0.8340
21 I B 0.0000
22 S B -0.9905
23 C B 0.0000
24 R B -2.3504
25 S B 0.0000
26 S B -0.9723
27 Q B -1.4812
28 S B -0.7677
29 L B 0.0000
30 L B 0.7812
31 H B -0.1244
32 S B -0.3713
33 S B -0.5380
34 G B -0.5644
35 N B -0.5334
36 T B 0.0000
37 Y B 0.0341
38 L B 0.0000
39 E B 0.0000
40 W B 0.0000
41 Y B 0.0000
42 Q B 0.0000
43 Q B 0.0000
44 R B -1.3340
45 P B -1.2346
46 G B -1.4782
47 Q B -1.7899
48 S B -1.2031
49 P B 0.0000
50 R B -1.0428
51 P B 0.0000
52 L B 0.0000
53 I B 0.0000
54 Y B -0.1386
55 K B -0.6127
56 I B -0.5195
57 S B -0.6232
58 T B -0.7480
59 R B -1.6169
60 F B 0.0000
61 S B -0.7265
62 G B -0.9933
63 V B 0.0000
64 P B -1.3667
65 D B -2.4197
66 R B -2.1369
67 F B 0.0000
68 S B -1.4264
69 G B 0.0000
70 S B -0.8777
71 G B -1.0506
72 S B -0.7509
73 G B -0.6357
74 T B -1.4690
75 D B -2.1975
76 F B 0.0000
77 T B -1.1518
78 L B 0.0000
79 K B -1.9737
80 I B 0.0000
81 S B -2.2560
82 R B -2.9049
83 V B 0.0000
84 E B -2.2756
85 A B -1.4239
86 E B -1.9383
87 D B 0.0000
88 V B -0.8767
89 G B 0.0000
90 V B 0.1742
91 Y B 0.0000
92 Y B 0.0000
93 C B 0.0000
94 F B 0.0000
95 Q B 0.0000
96 G B 0.0000
97 S B 0.0000
98 H B -0.1556
99 V B 0.4611
100 P B -0.2299
101 Y B 0.2598
102 T B 0.0710
103 F B 0.0000
104 G B 0.0000
105 G B -0.3428
106 G B -0.1858
107 T B 0.0000
108 K B -0.1311
109 V B 0.0000
110 E B -0.7968
111 I B 0.0000
112 K B -1.6627
113 R B -1.1056
114 T B -0.1704
115 V B 0.3672
116 A B 0.0152
117 A B -0.1105
118 P B 0.0000
119 S B -0.2203
120 V B 0.0000
121 F B 0.0000
122 I B 0.0000
123 F B 0.0000
124 P B -0.5252
125 P B 0.0000
126 S B -1.7805
127 D B -2.9225
128 E B -2.9321
129 Q B 0.0000
130 L B -2.2521
131 K B -2.8459
132 S B -1.7586
133 G B -1.2323
134 T B -1.0074
135 A B 0.0000
136 S B 0.0000
137 V B 0.0000
138 V B 0.0000
139 C B 0.0000
140 L B 0.0000
141 L B 0.0000
142 N B 0.0000
143 N B -0.8780
144 F B 0.0000
145 Y B 0.0000
146 P B -1.5703
147 R B -2.4860
148 E B -2.9557
149 A B -2.1842
150 K B -2.3120
151 V B -0.9328
152 Q B -0.4319
153 W B 0.0000
154 K B -0.5282
155 V B 0.0000
156 D B -1.6985
157 N B -1.4568
158 A B -0.3072
159 L B 0.7307
160 Q B -0.2560
161 S B -0.6166
162 G B -1.2415
163 N B -1.5266
164 S B -1.3621
165 Q B -1.3288
166 E B -1.5488
167 S B -0.8531
168 V B -0.7323
169 T B -1.1712
170 E B -2.2613
171 Q B -1.8954
172 D B -2.0195
173 S B -1.9134
174 K B -2.2097
175 D B -1.6612
176 S B -1.7967
177 T B 0.0000
178 Y B 0.0000
179 S B 0.0000
180 L B 0.0000
181 S B 0.0000
182 S B 0.0000
183 T B -0.6697
184 L B 0.0000
185 T B -0.6303
186 L B -0.8122
187 S B -1.0380
188 K B -1.9975
189 A B -1.8805
190 D B -2.6201
191 Y B 0.0000
192 E B -3.0474
193 K B -3.2978
194 H B -2.3064
195 K B -1.5824
196 V B -0.8668
197 Y B 0.0000
198 A B 0.0000
199 C B 0.0000
200 E B -0.3773
201 V B 0.0000
202 T B -1.1190
203 H B 0.0000
204 Q B -1.6883
205 G B -0.4135
206 L B -0.1999
207 S B -0.4330
208 S B -0.3750
209 P B -0.4648
210 V B 0.3228
211 T B -0.1255
212 K B -0.4437
213 S B -0.4891
214 F B 0.0000
215 N B 0.0000
216 R B -1.0569
217 G B -0.9285
218 E B -0.5761
219 C B -0.2468
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Laboratory of Theory of Biopolymers 2018