Project name: query_structure

Status: done

Started: 2026-03-16 20:30:41
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Chain sequence(s) A: LPAPKNLVVSRVTEDSARLSWAKRPGAFDSFLIQYQESEKVGEAIVLTVPGSCRSYDLTGLKPGTEYTVSIYGVDVKYDIDSRPISSNPLSAIFTT
input PDB
Selected Chain(s) A
Distance of aggregation 10 Å
FoldX usage Yes
Dynamic mode No
Automated mutations No
Downloads Download all the data
Simulation log
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:00)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:00)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with A chain(s) selected             (00:00:00)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:00)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:00:00)
[INFO]       Analysis: Starting Aggrescan3D on folded.pdb                                          (00:00:57)
[INFO]       Main:     Simulation completed successfully.                                          (00:00:58)
Show buried residues

Minimal score value
-3.0644
Maximal score value
1.7523
Average score
-0.778
Total score value
-74.691

The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan3D score mutation
residue index residue name chain Aggrescan3D score
mutation
1 L A 0.8000
2 P A -0.4637
3 A A -0.8457
4 P A 0.0000
5 K A -2.4324
6 N A -1.5910
7 L A -0.3937
8 V A 1.1574
9 V A 0.6677
10 S A -0.5930
11 R A -1.9992
12 V A -1.0184
13 T A -1.7911
14 E A -3.0596
15 D A -2.7725
16 S A -2.0910
17 A A 0.0000
18 R A -1.2158
19 L A 0.0000
20 S A -0.6558
21 W A 0.0000
22 A A -1.8236
23 K A -2.3486
24 R A -2.4848
25 P A -1.4760
26 G A -1.5326
27 A A -1.2486
28 F A 0.0000
29 D A -1.7413
30 S A -0.6539
31 F A 0.0000
32 L A 0.7079
33 I A 0.0000
34 Q A 0.4399
35 Y A 0.3281
36 Q A -0.8842
37 E A -1.8247
38 S A -1.5569
39 E A -2.5450
40 K A -1.7945
41 V A 0.1160
42 G A -0.9204
43 E A -1.7928
44 A A -0.3691
45 I A 0.7429
46 V A 1.4893
47 L A 1.1663
48 T A 0.4624
49 V A 0.0000
50 P A -0.8883
51 G A 0.0000
52 S A -1.1378
53 C A -1.1068
54 R A -1.8869
55 S A -1.0705
56 Y A -0.9124
57 D A -1.6943
58 L A 0.0000
59 T A -1.3724
60 G A -1.5159
61 L A 0.0000
62 K A -3.0644
63 P A -2.6393
64 G A -1.9305
65 T A -2.3792
66 E A -2.1715
67 Y A 0.0000
68 T A -0.0460
69 V A 0.0000
70 S A 0.2183
71 I A 0.0000
72 Y A 0.0924
73 G A 0.0000
74 V A -0.0594
75 D A -0.6062
76 V A 0.1821
77 K A -1.0837
78 Y A -0.7448
79 D A -1.5733
80 I A 0.1308
81 D A -1.7673
82 S A -1.4560
83 R A -2.2878
84 P A -1.0871
85 I A -0.1947
86 S A -0.2166
87 S A 0.0000
88 N A -1.0827
89 P A -0.8616
90 L A -0.7125
91 S A 0.0653
92 A A 1.1843
93 I A 1.7523
94 F A 0.0000
95 T A -0.9226
96 T A -2.0020
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Laboratory of Theory of Biopolymers 2018