Project name: query_structure

Status: done

Started: 2026-03-17 00:16:33
Settings
Chain sequence(s) A: NFDATDDEDNFDANMADNFDATDDEDNFDAIDNFDATDDEDNFDACMDNFDATDDEDNSNMADNFDATDDEDNSIDNFDATDDEDNSCMD
input PDB
Selected Chain(s) A
Distance of aggregation 10 Å
FoldX usage Yes
Dynamic mode No
Automated mutations No
Downloads Download all the data
Simulation log
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:00)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:00)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with A chain(s) selected             (00:00:00)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:00)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:00:00)
[INFO]       Analysis: Starting Aggrescan3D on folded.pdb                                          (00:00:27)
[INFO]       Main:     Simulation completed successfully.                                          (00:00:27)
Show buried residues

Minimal score value
-4.5108
Maximal score value
1.049
Average score
-1.9932
Total score value
-179.3865

The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan3D score mutation
residue index residue name chain Aggrescan3D score
mutation
1 N A -2.0229
2 F A -2.0930
3 D A -2.7288
4 A A -2.7977
5 T A -2.4142
6 D A -3.4270
7 D A -4.0243
8 E A -4.2822
9 D A -3.8322
10 N A -2.2551
11 F A -0.1060
12 D A -1.5617
13 A A -0.6600
14 N A -0.5899
15 M A -0.5002
16 A A -0.7439
17 D A -2.1780
18 N A -1.4902
19 F A 0.0126
20 D A -1.9950
21 A A -2.0337
22 T A -2.1057
23 D A -3.7260
24 D A -4.3056
25 E A -4.5108
26 D A -4.3159
27 N A -2.5699
28 F A -0.3601
29 D A -2.0336
30 A A -0.9996
31 I A -0.9366
32 D A -1.5818
33 N A -2.2126
34 F A -0.7969
35 D A -1.4252
36 A A -0.8223
37 T A -1.4508
38 D A -3.0841
39 D A -3.4491
40 E A -3.3449
41 D A -2.3459
42 N A -1.4143
43 F A -0.0600
44 D A -1.5564
45 A A -0.2879
46 C A 0.8707
47 M A 1.0490
48 D A -0.4163
49 N A -0.6199
50 F A 1.0162
51 D A -1.3653
52 A A -2.0831
53 T A -3.3255
54 D A -3.6484
55 D A -4.2886
56 E A -4.3603
57 D A -4.2386
58 N A -3.3706
59 S A -2.4042
60 N A -2.2285
61 M A -0.6854
62 A A -0.8365
63 D A -2.3624
64 N A -1.5454
65 F A -0.0027
66 D A -2.0756
67 A A -1.4463
68 T A -2.5408
69 D A -4.2641
70 D A -4.2348
71 E A -4.4657
72 D A -4.3317
73 N A -3.1921
74 S A -1.0256
75 I A 0.3878
76 D A -1.6046
77 N A -0.9332
78 F A 0.1604
79 D A -1.6971
80 A A -1.0608
81 T A -1.9428
82 D A -3.2630
83 D A -4.0411
84 E A -4.1541
85 D A -3.4991
86 N A -2.4381
87 S A -0.8422
88 C A 0.1077
89 M A 0.3494
90 D A -1.0738
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Laboratory of Theory of Biopolymers 2018