Project name: query_structure

Status: done

Started: 2026-03-17 00:46:29
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Chain sequence(s) A: QVQLVESGGGLVQAGGSLRLSCAASGFPVWTAYMEWYRQAPGKEREWVAAIESWGWWTYYADSVKGRFTISRDNAKNTVYLQMNSLKPEDTAVYYCAVEVGDHYYGQGTQVTVS
input PDB
Selected Chain(s) A
Distance of aggregation 10 Å
FoldX usage Yes
Dynamic mode No
Automated mutations No
Downloads Download all the data
Simulation log
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:00)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:00)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with A chain(s) selected             (00:00:00)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:00)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:00:00)
[INFO]       Analysis: Starting Aggrescan3D on folded.pdb                                          (00:01:16)
[INFO]       Main:     Simulation completed successfully.                                          (00:01:17)
Show buried residues

Minimal score value
-3.7113
Maximal score value
1.8734
Average score
-0.6852
Total score value
-78.1124

The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan3D score mutation
residue index residue name chain Aggrescan3D score
mutation
1 Q A -1.3711
2 V A -0.7119
3 Q A -1.0992
4 L A 0.0000
5 V A 0.5103
6 E A 0.0000
7 S A -0.6974
8 G A -1.0173
9 G A -0.8306
10 G A -0.0715
11 L A 1.0113
12 V A -0.0117
13 Q A -1.2101
14 A A -1.4188
15 G A -1.3429
16 G A -0.8859
17 S A -1.2197
18 L A -1.0321
19 R A -2.1366
20 L A 0.0000
21 S A -0.4907
22 C A 0.0000
23 A A -0.2902
24 A A 0.0000
25 S A -0.6480
26 G A -0.9009
27 F A -0.1420
28 P A -0.4008
29 V A 0.0000
30 W A 0.4726
31 T A 0.5108
32 A A 0.0000
33 Y A 0.0491
34 M A 0.0000
35 E A -0.1366
36 W A 0.0000
37 Y A -0.2317
38 R A 0.0000
39 Q A -2.1684
40 A A -2.0967
41 P A -1.4732
42 G A -2.0045
43 K A -3.4301
44 E A -3.7113
45 R A -3.0308
46 E A -1.8578
47 W A -0.6255
48 V A 0.0000
49 A A 0.0000
50 A A 0.0000
51 I A 0.0000
52 E A 0.6137
53 S A 0.9177
54 W A 1.5592
55 G A 1.0257
56 W A 1.8734
57 W A 1.8723
58 T A 0.9758
59 Y A 0.4506
60 Y A -0.5481
61 A A -1.1809
62 D A -2.3313
63 S A -1.7359
64 V A 0.0000
65 K A -2.5212
66 G A -1.7842
67 R A -1.4883
68 F A 0.0000
69 T A -0.7800
70 I A 0.0000
71 S A -0.5773
72 R A -1.0246
73 D A -1.8526
74 N A -1.9894
75 A A -1.6327
76 K A -2.4451
77 N A -1.6687
78 T A 0.0000
79 V A 0.0000
80 Y A -0.7009
81 L A 0.0000
82 Q A -1.2389
83 M A 0.0000
84 N A -1.4754
85 S A -1.2438
86 L A 0.0000
87 K A -2.3356
88 P A -1.9519
89 E A -2.3558
90 D A 0.0000
91 T A -0.9826
92 A A 0.0000
93 V A -0.6729
94 Y A 0.0000
95 Y A -0.2219
96 C A 0.0000
97 A A 0.0000
98 V A 0.0000
99 E A -2.2129
100 V A -0.8725
101 G A -1.5754
102 D A -2.5021
103 H A -2.0253
104 Y A -0.8954
105 Y A -0.2969
106 G A -0.1960
107 Q A -1.0783
108 G A -0.5898
109 T A 0.0000
110 Q A -1.1930
111 V A 0.0000
112 T A -0.3272
113 V A 0.0000
114 S A -0.7541
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Laboratory of Theory of Biopolymers 2018